diff --git a/docs/publications.md b/docs/publications.md index 76ab292f2c6..5fd7d9aa347 100644 --- a/docs/publications.md +++ b/docs/publications.md @@ -1,6 +1,24 @@ # Publications The following publications used WEBKNOSSOS for exploring large 3D electron-microscopy (EM) and light-microscopy (LM) datasets as well as collaboratively generating annotations or other tasks. Please [get in touch with us](mailto:hello@webknossos.org) if your publication is missing. +## 2023 +* Tri M. Nguyen, Logan A. Thomas, Jeff L. Rhoades, Ilaria Ricchi, Xintong Cindy Yuan, Arlo Sheridan, David G. C. Hildebrand, Jan Funke, Wade G. Regehr & Wei-Chung Allen Lee. + Structured cerebellar connectivity supports resilient pattern separation. + [Nature (2023). DOI: 10.1038/s41586-022-05471-w](https://doi.org/10.1038/s41586-022-05471-w) + +* Wan Qing Yu, Rachael Swanstrom, Crystal L. Sigulinsky, Richard M. Ahlquist, Sharm Knecht, Bryan W. Jones, David M. Berson & Rachel O. Wong. + Distinctive synaptic structural motifs link excitatory retinal interneurons to diverse postsynaptic partner types. + [Cell Reports (2023). DOI: 10.1016/j.celrep.2023.112006](https://doi.org/10.1016/j.celrep.2023.112006) + +* Kun Song, Zhihui Feng & Moritz Helmstaedter. + High-contrast en bloc staining of mouse whole-brain and human brain samples for EM-based connectomics. + [Nature Methods (2023). DOI: 10.1101/2022.03.30.486341](https://doi.org/10.1101/2022.03.30.486341) + +* Tri Nguyen, Mukul Narwani, Mark Larson, Yicong Li, Shuhan Xie, Hanspeter Pfister, Donglai Wei, Nir Shavit, Lu Mi, Alexandra Pacureanu, Wei-Chung Lee & Aaron T. Kuan. + The XPRESS Challenge: Xray Projectomic Reconstruction -- Extracting Segmentation with Skeletons. + [arXiv (2023). DOI: 10.48550/arXiv.2302.03819](https://doi.org/10.48550/arXiv.2302.03819) + + ## 2022 * Sahil Loomba, Jakob Straehle, Vijayan Gangadharan, Natalie Heike, Abdelrahman Khalifa, Alessandro Motta, Niansheng Ju, Meike Sievers, Jens Gempt, Hanno S. Meyer & Moritz Helmstaedter. Connectomic comparison of mouse and human cortex. @@ -22,11 +40,24 @@ The following publications used WEBKNOSSOS for exploring large 3D electron-micro * Yuxin Zhang, Tobias Ackels, Alexandra Pacureanu, Marie-Christine Zdora, Anne Bonnin, Andreas T. Schaefer, Carles Bosch. Sample preparation and warping accuracy for correlative multimodal imaging in the mouse olfactory bulb using 2-photon, synchrotron X-ray and volume electron microscopy. - [bioRxiv (2022) DOI: 10.1101/2022.02.18.481045](https://doi.org/10.1101/2022.02.18.481045) + [Frontiers in Cell and Development al Biology (2022). DOI: 10.3389/fcell.2022.880696](https://doi.org/10.3389/fcell.2022.880696) + +* Daniela Chequer Charan, Yunfeng Hua, Haoyu Wang, Wenqing Huang, Fangfang Wang, Ana Belén Elgoyhen, Kevin M Boergens & Mariano N Di Guilmi. + Volume electron microscopy reveals age-related circuit remodeling in the auditory brainstem. + [Frontiers in Cellular Neuroscience (2022). DOI: 10.3389/fncel.2022.1070438](https://doi.org/10.3389/fncel.2022.1070438) + +* Yong Fan, Chenhui Huang, Juan Chen, Yanyan Chen, Yan Wang, Zhiguang Yan , Weina Yu, Haibo Wu, Ying Yang, Leit ong Nie, Sijia Huang, Fangfang Wang, H aoyu Wang, Yunfeng Hua, Qifeng Lyu, Yanping Kuang & Ming Lei. + Mutations in CCIN cause teratozoospermia and male infertility. + [Science Bulletin (2022). DOI: 10.1016/j.scib.2022.09.026](https://doi.org/10.1016/j.scib.2022.09.026) + +* Anthony Santella, Irina Kolotuev, Caroline Kizilyaprak & Zhirong Bao. + Cross-modality synthesis of EM time series and live fluorescence imaging. + [Elife (2022). DOI: 10.7554/eLife.77918](https://doi.org/10.7554/eLife.77918) + [**View data**](https://wklink.org/1322) in WEBKNOSSOS ## 2021 -* Anjali Gour, Kevin M. Boergens, Natalie Heike, Yunfeng Hua, Philip Laserstein,Kun Song & Moritz Helmstaedter. +* Anjali Gour, Kevin M. Boergens, Natalie Heike, Yunfeng Hua, Philip Laserstein, Kun Song & Moritz Helmstaedter. Postnatal connectomic development of inhibition in mouse barrel cortex. [Science (2021) DOI: 10.1126/science.abb4534.](http://dx.doi.org/10.1126/science.abb4534) [**View data**](https://webknossos.org/publication/601801b6d77f39e121656acf) in WEBKNOSSOS. diff --git a/docs/tracing_ui.md b/docs/tracing_ui.md index 954cbb381ae..3a6ae851e0e 100644 --- a/docs/tracing_ui.md +++ b/docs/tracing_ui.md @@ -10,8 +10,9 @@ The main WEBKNOSSOS user interface for viewing and annotating datasets is divide ![An overview of the WEBKNOSSOS annotation UI highlighting the 4 main sections of the interface](images/tracing_ui_overview.jpeg) -[Read More About Skeleton Annotation](./skeleton_annotation.md) -[Read More About Volume Annotation](./volume_annotation.md) +Read More About [Skeleton Annotation](./skeleton_annotation.md) + +Read More About [Volume Annotation](./volume_annotation.md) ## The Toolbar