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index.Rmd
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index.Rmd
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---
title: "Pathology Articles from Turkey"
date: "Last Update on `r format(Sys.Date())`"
description: |
This is an auto generated and updated collection
site: distill::distill_website
---
🔬🔬🔬🔬 UNDER CONSTRUCTION 🛠⛔️⚠️🔩
---
```{r setup, include=TRUE}
knitr::opts_chunk$set(echo = TRUE
# cache = TRUE
)
```
```{r}
Sys.time()
```
```{r load library}
source(file = "R/loadLibrary.R")
```
<!-- "Bibliometric Studies" -->
<!-- "Reproducible Bibliometric Analysis of Pathology Articles Using PubMed, E-direct, WoS, Google Scholar" -->
<a class="twitter-follow-button" data-show-count="false"
href="https://twitter.com/serdarbalci">Follow @serdarbalci</a><script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
<!-- [](https://github.com/sbalci/PubMed/issues) -->
[](https://saythanks.io/to/sbalci)
<!-- [](http://hits.dwyl.io/sbalci/PubMed) -->
# Motivation
It is a very common bibliometric study type to retrospectively analyse the number of peer reviewed articles written from a country to view the amount of contribution made in a specific scientific discipline.
These studies require too much effort, since the data is generally behind paywalls and restrictions.
I have previously contributed to a research to identify the Articles from Turkey Published in Pathology Journals Indexed in International Indexes; which is published here: [Turk Patoloji Derg. 2010, 26(2):107-113 doi: 10.5146/tjpath.2010.01006](http://www.turkjpath.org/summary_en.php3?id=1423)
This study had required manual investigation of many excel files, which was time consuming; also redoing and updating the data and results require a similar amount of effort. That is why I am building this website to continuously update and analyse the pathology articles from Turkey.
<!-- --- -->
<!-- If you want to see the code used in the analysis please click the code button on the right upper corner or throughout the page. -->
<!-- I would like to hear your feedback: https://goo.gl/forms/YjGZ5DHgtPlR1RnB3 -->
<!-- This document will be continiously updated and the last update was on `r Sys.Date()`. -->
<!-- --- -->
<!-- # Analysis -->
<!-- --- -->
<!-- ## Country Based Comparison -->
<!-- To see the analysis comparing number of pathology articles from Turkey, German and Japan see this analysis: [Country Based Comparison](https://sbalci.github.io/pubmed/CountryBasedComparison.html) -->
<!-- --- -->
<!-- ## Articles per Journals per Country -->
<!-- In this analysis we aimed to compare number articles per journals per country. We tried to identify if articles from a country is published in certain journals: [Articles Per Journals Per Country](https://sbalci.github.io/pubmed/ArticlesPerJournalsPerCountry.html) -->
<!-- ## Most Common MeSH Terms and Keywords used in Pathology Articles from Turkey -->
<!-- In this analysis we aimed to identify the common research topics Turkish pathologists are interested. We extracted most common MeSH terms and keywords from PubMed articles using EDirect: -->
<!-- [MeSH Terms Pathology Articles From Turkey](https://sbalci.github.io/pubmed/MeSH_Terms_Pathology_Articles_From_Turkey.html) -->
<!-- --- -->
<!-- ## Pancreas Studies with Various Bibliometric Tools - Pancreas Studies in Pathology Journals -->
<!-- [Pancreas Studies with Various Bibliometric Tools - Pancreas Studies in Pathology Journals](PancreasStudies.nb.html) -->
<!-- --- -->
<!-- BalciS -->
<!-- --- -->
<!-- ## Journals Published Articles From Turkey -->
<!-- --- -->
<!-- ## SEER Research Per Countries / Who is doing SEER Research? -->
<!-- --- -->
<!-- ## Semantic Scholar -->
<!-- --- -->
<!-- ## neutrophil lymph ratio -->
<!-- --- -->
<!-- ## retracted pathology articles -->
<!-- --- -->
<!-- ## correction pathology articles -->
<!-- --- -->
<!-- ## p values in pathology articles a text analysis of pubmed articles using regular expression -->
<!-- --- -->
<!-- ## ulakbim patoloji TR dizin -->
<!-- --- -->
<!-- ## europepmc paketi ile endometriozis analizi -->
<!-- --- -->
<!-- VOSviewer için -->
<!-- pubmedden doi'leri al, doi listesi ile crossref tarat -->
<!-- --- -->
<!-- USCAP Abstracts vs Published Articles -->
<!-- --- -->
<!-- CiteSpaceV -->
<!-- CitNetExplorer -->
<!-- CodeForGitHubGist -->
<!-- css -->
<!-- data -->
<!-- docs -->
<!-- e-utilities-lecture-notes -->
<!-- figure -->
<!-- grid-2018-11-14 -->
<!-- images -->
<!-- Neurosurgery-Articles -->
<!-- pdf -->
<!-- Pediatric-Surgery -->
<!-- rsconnect -->
<!-- Videos -->
<!-- VOSviewer -->
<!-- ArticlesPerJournalsPerCountry.nb.html -->
<!-- BibliographicStudies.html -->
<!-- BibliographicStudies.nb.html -->
<!-- CountryBasedComparison.nb.html -->
<!-- endometriosis.nb.html -->
<!-- JournalsPublishedArticlesFromTurkey.nb.html -->
<!-- Making proper trend graphs.htm -->
<!-- MeSH_Terms_Pathology_Articles_From_Turkey.nb.html -->
<!-- p-values-in-Pathology-Articles.nb.html -->
<!-- PathologyArticlesFromTurkeyComparedtoAllPublishedArticles.nb.html -->
<!-- PubMedPackages.nb.html -->
<!-- README.html -->
<!-- Retrieving and Processing PubMed Records via easyPubMed (html).htm -->
<!-- SchedulePubMedAnalysis.nb.html -->
<!-- SchedulePubMedAnalysis2.nb.html -->
<!-- SEERResearchPerCountries.nb.html -->
<!-- SemanticScholar.nb.html -->
<!-- Sources.html -->
<!-- Sources.nb.html -->
<!-- Untitled.nb.html -->
<!-- --- -->
<!-- # Sources Used For Analysis -->
<!-- Here are the sources used in these analysis: [Sources Used For Analysis](https://sbalci.github.io/pubmed/Sources.html) -->
<!-- --- -->
<!-- # Feedback -->
<!-- [Serdar Balcı, MD, Pathologist](https://github.com/sbalci) would like to hear your feedback: https://goo.gl/forms/YjGZ5DHgtPlR1RnB3 -->
<!-- This document will be continiously updated and the last update was on `r Sys.Date()`. -->
<!-- --- -->
<script id="dsq-count-scr" src="//https-sbalci-github-io.disqus.com/count.js" async></script>
<div id="disqus_thread"></div>
<script>
/**
* RECOMMENDED CONFIGURATION VARIABLES: EDIT AND UNCOMMENT THE SECTION BELOW TO INSERT DYNAMIC VALUES FROM YOUR PLATFORM OR CMS.
* LEARN WHY DEFINING THESE VARIABLES IS IMPORTANT: https://disqus.com/admin/universalcode/#configuration-variables*/
/*
var disqus_config = function () {
this.page.url = PAGE_URL; // Replace PAGE_URL with your page's canonical URL variable
this.page.identifier = PAGE_IDENTIFIER; // Replace PAGE_IDENTIFIER with your page's unique identifier variable
};
*/
(function() { // DON'T EDIT BELOW THIS LINE
var d = document, s = d.createElement('script');
s.src = 'https://https-sbalci-github-io.disqus.com/embed.js';
s.setAttribute('data-timestamp', +new Date());
(d.head || d.body).appendChild(s);
})();
</script>
<noscript>Please enable JavaScript to view the <a href="https://disqus.com/?ref_noscript">comments powered by Disqus.</a></noscript>
---
# Aim {#aim}
**The aims of this study are:**
- Number of articles per country
- first affiliation
- last affiliation
- Number of articles per year
- use europepmc function to correct (to get % not just number) with number of articles published in that year
- Journal Names
- journal distiribution per country