diff --git a/.github/workflows/check-release.yaml b/.github/workflows/check-release.yaml index de457a4..f4b17a4 100644 --- a/.github/workflows/check-release.yaml +++ b/.github/workflows/check-release.yaml @@ -1,33 +1,29 @@ -# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. -# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help on: - workflow_dispatch: - # push: - # branches: - # - main - # - master - # pull_request: - # branches: - # - main - # - master + push: + branches: [main, master] + pull_request: + branches: [main, master] name: R-CMD-check jobs: R-CMD-check: - runs-on: macOS-latest + runs-on: ubuntu-latest env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes steps: - - uses: actions/checkout@v2 - - uses: r-lib/actions/setup-r@v1 - - name: Install dependencies - run: | - install.packages(c("remotes", "rcmdcheck")) - remotes::install_deps(dependencies = TRUE) - shell: Rscript {0} - - name: Check - run: | - options(crayon.enabled = TRUE) - rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") - shell: Rscript {0} + - uses: actions/checkout@v3 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 diff --git a/.github/workflows/check-standard.yaml b/.github/workflows/check-standard.yaml index 536d96f..a3ac618 100644 --- a/.github/workflows/check-standard.yaml +++ b/.github/workflows/check-standard.yaml @@ -1,15 +1,10 @@ -# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. -# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help on: - workflow_dispatch: - # push: - # branches: - # - main - # - master - # pull_request: - # branches: - # - main - # - master + push: + branches: [main, master] + pull_request: + branches: [main, master] name: R-CMD-check @@ -23,65 +18,32 @@ jobs: fail-fast: false matrix: config: + - {os: macos-latest, r: 'release'} - {os: windows-latest, r: 'release'} - - {os: macOS-latest, r: 'release'} - - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} env: - R_REMOTES_NO_ERRORS_FROM_WARNINGS: true - RSPM: ${{ matrix.config.rspm }} GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - - uses: r-lib/actions/setup-r@v1 + - uses: r-lib/actions/setup-pandoc@v2 + + - uses: r-lib/actions/setup-r@v2 with: r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true - - uses: r-lib/actions/setup-pandoc@v1 - - - name: Query dependencies - run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") - shell: Rscript {0} - - - name: Restore R package cache - if: runner.os != 'Windows' - uses: actions/cache@v2 + - uses: r-lib/actions/setup-r-dependencies@v2 with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - - - name: Install system dependencies - if: runner.os == 'Linux' - run: | - while read -r cmd - do - eval sudo $cmd - done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') - - - name: Install dependencies - run: | - remotes::install_deps(dependencies = TRUE) - remotes::install_cran("rcmdcheck") - shell: Rscript {0} - - - name: Check - env: - _R_CHECK_CRAN_INCOMING_REMOTE_: false - run: | - options(crayon.enabled = TRUE) - rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") - shell: Rscript {0} + extra-packages: any::rcmdcheck + needs: check - - name: Upload check results - if: failure() - uses: actions/upload-artifact@main + - uses: r-lib/actions/check-r-package@v2 with: - name: ${{ runner.os }}-r${{ matrix.config.r }}-results - path: check + upload-snapshots: true diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 1abece4..ed7650c 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -1,48 +1,48 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help on: push: - branches: - - main - - master + branches: [main, master] + pull_request: + branches: [main, master] + release: + types: [published] + workflow_dispatch: name: pkgdown jobs: pkgdown: - runs-on: macOS-latest + runs-on: ubuntu-latest + # Only restrict concurrency for non-PR jobs + concurrency: + group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + permissions: + contents: write steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - - uses: r-lib/actions/setup-r@v1 + - uses: r-lib/actions/setup-pandoc@v2 - - uses: r-lib/actions/setup-pandoc@v1 - - - name: Query dependencies - run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") - shell: Rscript {0} + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true - - name: Restore R package cache - uses: actions/cache@v2 + - uses: r-lib/actions/setup-r-dependencies@v2 with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- + extra-packages: any::pkgdown, local::. + needs: website - - name: Install dependencies - run: | - remotes::install_deps(dependencies = TRUE) - install.packages("pkgdown", type = "binary") + - name: Build site + run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) shell: Rscript {0} - - name: Install package - run: R CMD INSTALL . - - - name: Deploy package - run: | - git config --local user.email "actions@github.com" - git config --local user.name "GitHub Actions" - Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' + - name: Deploy to GitHub pages 🚀 + if: github.event_name != 'pull_request' + uses: JamesIves/github-pages-deploy-action@v4.4.1 + with: + clean: false + branch: gh-pages + folder: docs diff --git a/.github/workflows/r.yml b/.github/workflows/r.yml deleted file mode 100644 index fdc21a6..0000000 --- a/.github/workflows/r.yml +++ /dev/null @@ -1,37 +0,0 @@ -# This workflow uses actions that are not certified by GitHub. -# They are provided by a third-party and are governed by -# separate terms of service, privacy policy, and support -# documentation. -# -# See https://github.com/r-lib/actions/tree/master/examples#readme for -# additional example workflows available for the R community. - -name: R - -on: - push: - branches: [ master ] - pull_request: - branches: [ master ] - -jobs: - build: - runs-on: macos-latest - strategy: - matrix: - r-version: ['3.6.3', '4.1.1'] - - steps: - - uses: actions/checkout@v2 - - name: Set up R ${{ matrix.r-version }} - uses: r-lib/actions/setup-r@f57f1301a053485946083d7a45022b278929a78a - with: - r-version: ${{ matrix.r-version }} - - name: Install dependencies - run: | - install.packages(c("remotes", "rcmdcheck")) - remotes::install_deps(dependencies = TRUE) - shell: Rscript {0} - - name: Check - run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") - shell: Rscript {0} diff --git a/ClinicoPathDescriptives.Rproj b/ClinicoPathDescriptives.Rproj index bbcf1d9..949253e 100644 --- a/ClinicoPathDescriptives.Rproj +++ b/ClinicoPathDescriptives.Rproj @@ -17,5 +17,4 @@ StripTrailingWhitespace: Yes BuildType: Package PackageUseDevtools: Yes -PackageCleanBeforeInstall: Yes PackageInstallArgs: --no-multiarch --with-keep.source diff --git a/DESCRIPTION b/DESCRIPTION index f29857e..1593429 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Type: Package Package: ClinicoPathDescriptives Title: Descriptives Functions for Clinicopathological Research -Version: 0.0.2.05 -Date: 2022-09-20 +Version: 0.0.2.06 +Date: 2023-06-01 Authors@R: person(given = "Serdar", family = "Balci", @@ -54,4 +54,4 @@ Remotes: Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) -RoxygenNote: 7.1.2 +RoxygenNote: 7.2.3 diff --git a/R/agepyramid.b.R b/R/agepyramid.b.R index 15e58ff..f84cff4 100644 --- a/R/agepyramid.b.R +++ b/R/agepyramid.b.R @@ -1,8 +1,4 @@ #' @title Age Pyramid -#' -#' -#' -#' #' @importFrom R6 R6Class #' @import jmvcore #' diff --git a/R/agepyramid.h.R b/R/agepyramid.h.R index 27682e1..4b62b75 100644 --- a/R/agepyramid.h.R +++ b/R/agepyramid.h.R @@ -117,7 +117,8 @@ agepyramidBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Age Pyramid diff --git a/R/alluvial.h.R b/R/alluvial.h.R index fcf06b4..5b1dfe6 100644 --- a/R/alluvial.h.R +++ b/R/alluvial.h.R @@ -174,7 +174,8 @@ alluvialBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Alluvial Diagrams diff --git a/R/benford.h.R b/R/benford.h.R index c0127c9..4ddf4be 100644 --- a/R/benford.h.R +++ b/R/benford.h.R @@ -86,7 +86,8 @@ benfordBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Benford Analysis diff --git a/R/crosstable.b.R b/R/crosstable.b.R index ecd740f..a2ac351 100644 --- a/R/crosstable.b.R +++ b/R/crosstable.b.R @@ -1,6 +1,4 @@ #' @title Cross Table -#' -#' #' @importFrom R6 R6Class #' @import jmvcore #' diff --git a/R/crosstable.h.R b/R/crosstable.h.R index e93d2ce..1a11a1d 100644 --- a/R/crosstable.h.R +++ b/R/crosstable.h.R @@ -166,7 +166,8 @@ crosstableBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Cross Tables diff --git a/R/reportcat.h.R b/R/reportcat.h.R index 5cdeb7e..4fd70c7 100644 --- a/R/reportcat.h.R +++ b/R/reportcat.h.R @@ -75,7 +75,8 @@ reportcatBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Summary of Categorical Variables diff --git a/R/summarydata.b.R b/R/summarydata.b.R index 27708ea..f61e955 100644 --- a/R/summarydata.b.R +++ b/R/summarydata.b.R @@ -1,6 +1,4 @@ #' @title Summary of Continuous Variables -#' -#' #' @return Text #' #' @importFrom R6 R6Class diff --git a/R/summarydata.h.R b/R/summarydata.h.R index cc513ad..2c3af16 100644 --- a/R/summarydata.h.R +++ b/R/summarydata.h.R @@ -71,7 +71,8 @@ summarydataBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Summary of Continuous Variables diff --git a/R/tableone.h.R b/R/tableone.h.R index e98b0b7..2c106d4 100644 --- a/R/tableone.h.R +++ b/R/tableone.h.R @@ -123,7 +123,8 @@ tableoneBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Table One diff --git a/R/vartree.h.R b/R/vartree.h.R index 10738a3..3cd3653 100644 --- a/R/vartree.h.R +++ b/R/vartree.h.R @@ -301,7 +301,8 @@ vartreeBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Variable Tree diff --git a/R/venn.b.R b/R/venn.b.R index 765adb6..46a7dd5 100644 --- a/R/venn.b.R +++ b/R/venn.b.R @@ -1,8 +1,4 @@ #' @title Venn Diagram -#' -#' -#' -#' #' @importFrom R6 R6Class #' @import jmvcore #' @importFrom dplyr inner_join diff --git a/R/venn.h.R b/R/venn.h.R index 1bd1d9c..6aa6e99 100644 --- a/R/venn.h.R +++ b/R/venn.h.R @@ -154,7 +154,8 @@ vennBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( revision = revision, pause = NULL, completeWhenFilled = FALSE, - requiresMissings = FALSE) + requiresMissings = FALSE, + weightsSupport = 'auto') })) #' Venn Diagram diff --git a/jamovi/0000.yaml b/jamovi/0000.yaml index cc639fb..8c03a36 100644 --- a/jamovi/0000.yaml +++ b/jamovi/0000.yaml @@ -1,12 +1,12 @@ --- title: Descriptives Functions for Clinicopathological Research name: ClinicoPathDescriptives -version: 0.0.2.05 +version: 0.0.2.06 jms: '1.0' authors: - Serdar Balci maintainer: Serdar Balci -date: '2022-04-10' +date: '2023-06-01' type: R description: >- Descriptives Functions for Clinicopathological Research Descriptive functions diff --git a/man/agepyramidClass.Rd b/man/agepyramidClass.Rd index cc4f70e..a5b4267 100644 --- a/man/agepyramidClass.Rd +++ b/man/agepyramidClass.Rd @@ -9,51 +9,51 @@ Age Pyramid Age Pyramid } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:agepyramidBase]{ClinicoPathDescriptives::agepyramidBase}} -> \code{agepyramidClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::agepyramidBase} -> \code{agepyramidClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{agepyramidClass$clone()}} +\item \href{#method-agepyramidClass-clone}{\code{agepyramidClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/agepyramidBase.html#method-initialize}{\code{ClinicoPathDescriptives::agepyramidBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-agepyramidClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/alluvialClass.Rd b/man/alluvialClass.Rd index 040e42c..6c0b662 100644 --- a/man/alluvialClass.Rd +++ b/man/alluvialClass.Rd @@ -12,51 +12,51 @@ Alluvial Plot Alluvial Plot } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:alluvialBase]{ClinicoPathDescriptives::alluvialBase}} -> \code{alluvialClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::alluvialBase} -> \code{alluvialClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{alluvialClass$clone()}} +\item \href{#method-alluvialClass-clone}{\code{alluvialClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/alluvialBase.html#method-initialize}{\code{ClinicoPathDescriptives::alluvialBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-alluvialClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/crosstableClass.Rd b/man/crosstableClass.Rd index c090178..6b8c927 100644 --- a/man/crosstableClass.Rd +++ b/man/crosstableClass.Rd @@ -9,51 +9,51 @@ Cross Table Cross Table } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:crosstableBase]{ClinicoPathDescriptives::crosstableBase}} -> \code{crosstableClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::crosstableBase} -> \code{crosstableClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{crosstableClass$clone()}} +\item \href{#method-crosstableClass-clone}{\code{crosstableClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/crosstableBase.html#method-initialize}{\code{ClinicoPathDescriptives::crosstableBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-crosstableClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/reportcatClass.Rd b/man/reportcatClass.Rd index 8aa1fdb..670ae7d 100644 --- a/man/reportcatClass.Rd +++ b/man/reportcatClass.Rd @@ -12,51 +12,51 @@ Summary of Categorical Variables Summary of Categorical Variables } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:reportcatBase]{ClinicoPathDescriptives::reportcatBase}} -> \code{reportcatClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::reportcatBase} -> \code{reportcatClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{reportcatClass$clone()}} +\item \href{#method-reportcatClass-clone}{\code{reportcatClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/reportcatBase.html#method-initialize}{\code{ClinicoPathDescriptives::reportcatBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-reportcatClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/summarydataClass.Rd b/man/summarydataClass.Rd index 11c7486..af44cba 100644 --- a/man/summarydataClass.Rd +++ b/man/summarydataClass.Rd @@ -12,51 +12,51 @@ Summary of Continuous Variables Summary of Continuous Variables } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:summarydataBase]{ClinicoPathDescriptives::summarydataBase}} -> \code{summarydataClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::summarydataBase} -> \code{summarydataClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{summarydataClass$clone()}} +\item \href{#method-summarydataClass-clone}{\code{summarydataClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/summarydataBase.html#method-initialize}{\code{ClinicoPathDescriptives::summarydataBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-summarydataClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/tableoneClass.Rd b/man/tableoneClass.Rd index bbdfc3f..56b683e 100644 --- a/man/tableoneClass.Rd +++ b/man/tableoneClass.Rd @@ -12,51 +12,51 @@ Table One Table One } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:tableoneBase]{ClinicoPathDescriptives::tableoneBase}} -> \code{tableoneClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::tableoneBase} -> \code{tableoneClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{tableoneClass$clone()}} +\item \href{#method-tableoneClass-clone}{\code{tableoneClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/tableoneBase.html#method-initialize}{\code{ClinicoPathDescriptives::tableoneBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-tableoneClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/vartreeClass.Rd b/man/vartreeClass.Rd index fd910b7..49bed80 100644 --- a/man/vartreeClass.Rd +++ b/man/vartreeClass.Rd @@ -9,51 +9,51 @@ Variable Tree Variable Tree } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:vartreeBase]{ClinicoPathDescriptives::vartreeBase}} -> \code{vartreeClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::vartreeBase} -> \code{vartreeClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{vartreeClass$clone()}} +\item \href{#method-vartreeClass-clone}{\code{vartreeClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/vartreeBase.html#method-initialize}{\code{ClinicoPathDescriptives::vartreeBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-vartreeClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/vennClass.Rd b/man/vennClass.Rd index 8453e61..ef4613b 100644 --- a/man/vennClass.Rd +++ b/man/vennClass.Rd @@ -9,51 +9,51 @@ Venn Diagram Venn Diagram } \section{Super classes}{ -\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{\link[ClinicoPathDescriptives:vennBase]{ClinicoPathDescriptives::vennBase}} -> \code{vennClass} +\code{\link[jmvcore:Analysis]{jmvcore::Analysis}} -> \code{ClinicoPathDescriptives::vennBase} -> \code{vennClass} } \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-clone}{\code{vennClass$clone()}} +\item \href{#method-vennClass-clone}{\code{vennClass$clone()}} } } -\if{html}{ -\out{
Inherited methods} -\itemize{ -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImage}{\code{jmvcore::Analysis$.createImage()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createImages}{\code{jmvcore::Analysis$.createImages()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.createPlotObject}{\code{jmvcore::Analysis$.createPlotObject()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.load}{\code{jmvcore::Analysis$.load()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.render}{\code{jmvcore::Analysis$.render()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.save}{\code{jmvcore::Analysis$.save()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.savePart}{\code{jmvcore::Analysis$.savePart()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setCheckpoint}{\code{jmvcore::Analysis$.setCheckpoint()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setParent}{\code{jmvcore::Analysis$.setParent()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetHeaderSource}{\code{jmvcore::Analysis$.setReadDatasetHeaderSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setReadDatasetSource}{\code{jmvcore::Analysis$.setReadDatasetSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setResourcesPathSource}{\code{jmvcore::Analysis$.setResourcesPathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-.setStatePathSource}{\code{jmvcore::Analysis$.setStatePathSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-addAddon}{\code{jmvcore::Analysis$addAddon()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asProtoBuf}{\code{jmvcore::Analysis$asProtoBuf()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-asSource}{\code{jmvcore::Analysis$asSource()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-check}{\code{jmvcore::Analysis$check()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-init}{\code{jmvcore::Analysis$init()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-optionsChangedHandler}{\code{jmvcore::Analysis$optionsChangedHandler()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-postInit}{\code{jmvcore::Analysis$postInit()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-print}{\code{jmvcore::Analysis$print()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-readDataset}{\code{jmvcore::Analysis$readDataset()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-run}{\code{jmvcore::Analysis$run()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-serialize}{\code{jmvcore::Analysis$serialize()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setError}{\code{jmvcore::Analysis$setError()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-setStatus}{\code{jmvcore::Analysis$setStatus()}}\out{} -\item \out{}\href{../../jmvcore/html/Analysis.html#method-translate}{\code{jmvcore::Analysis$translate()}}\out{} -\item \out{}\href{../../ClinicoPathDescriptives/html/vennBase.html#method-initialize}{\code{ClinicoPathDescriptives::vennBase$initialize()}}\out{} -} -\out{
} -} +\if{html}{\out{ +
Inherited methods + +
+}} \if{html}{\out{
}} -\if{html}{\out{}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-vennClass-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{