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'node stack overflow' when using 'IntegrateData'! #119

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amssljc opened this issue Dec 16, 2021 · 1 comment
Open

'node stack overflow' when using 'IntegrateData'! #119

amssljc opened this issue Dec 16, 2021 · 1 comment

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@amssljc
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amssljc commented Dec 16, 2021

When i run this code:

seurat.anchors <- FindIntegrationAnchors(object.list = seurat_list, anchor.features = features,nn.method = 'rann',reference = 10)
seurat.intergrated <- IntegrateData(anchorset = seurat.anchors)

The errors come up in this step:

Finding integration vector weights
Error: node stack overflow
Error during wrapup: node stack overflow
Error: no more error handlers available (recursive errors?); invoking 'abort' restart

Now I have loook several bugs about node stack overflow, it seems that 'Rfast' cause the error. I think there may exist some functions used in Seurat have been rewritten by Rfast, so it causes a false calling. Can you give me any suggestion to integrate my data?

@amssljc
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amssljc commented Dec 17, 2021

I have solved it by restart Rstudio and unloadNamespace. But i's not a long-term solution.

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