From 60c9c0bc287e538a40119236c05056b14c084188 Mon Sep 17 00:00:00 2001 From: saskiaotto Date: Sat, 13 Jul 2019 17:02:31 +0200 Subject: [PATCH] ready to submit --- DESCRIPTION | 2 +- cran-comments.md | 18 ++++++++++++++++-- docs/404.html | 2 +- docs/authors.html | 2 +- docs/index.html | 2 +- docs/news/index.html | 11 ++++++++++- docs/reference/INDperform-package.html | 2 +- docs/reference/all_results_ex.html | 2 +- docs/reference/approx_deriv.html | 2 +- docs/reference/calc_deriv.html | 2 +- docs/reference/calc_nrmse.html | 2 +- docs/reference/calc_pred.html | 2 +- docs/reference/check_ind_press.html | 2 +- docs/reference/check_input_tbl.html | 2 +- docs/reference/check_input_vec.html | 2 +- docs/reference/clust_sc.html | 2 +- docs/reference/compare_thresholds.html | 2 +- docs/reference/cond_boot.html | 2 +- docs/reference/cooks_dist_gamm.html | 2 +- docs/reference/crit_scores_tmpl.html | 2 +- docs/reference/dist_sc.html | 2 +- docs/reference/dist_sc_group.html | 2 +- docs/reference/expect_resp.html | 2 +- docs/reference/find_id.html | 2 +- docs/reference/get_signif_code.html | 2 +- docs/reference/get_sum_output.html | 2 +- docs/reference/ind_ex.html | 2 +- docs/reference/ind_init.html | 2 +- docs/reference/ind_init_ex.html | 2 +- docs/reference/index.html | 2 +- docs/reference/is_value.html | 2 +- docs/reference/loocv_thresh_gam.html | 2 +- docs/reference/merge_models.html | 2 +- docs/reference/merge_models_ex.html | 2 +- docs/reference/model_gam.html | 2 +- docs/reference/model_gam_ex.html | 2 +- docs/reference/model_gamm.html | 2 +- docs/reference/model_gamm_ex.html | 2 +- docs/reference/model_trend.html | 2 +- docs/reference/model_trend_ex.html | 2 +- docs/reference/nrmse.html | 2 +- docs/reference/pipe.html | 2 +- docs/reference/place_text.html | 2 +- docs/reference/plot_clust_sc.html | 2 +- docs/reference/plot_diagnostics.html | 2 +- docs/reference/plot_model.html | 2 +- docs/reference/plot_outline.html | 2 +- docs/reference/plot_spie.html | 2 +- docs/reference/plot_spiechart.html | 2 +- docs/reference/plot_statespace_ch.html | 2 +- docs/reference/plot_statespace_ed.html | 2 +- docs/reference/plot_thresh.html | 2 +- docs/reference/plot_trend.html | 2 +- docs/reference/press_ex.html | 2 +- docs/reference/press_type_ex.html | 2 +- docs/reference/scoring.html | 2 +- docs/reference/select_interaction.html | 2 +- docs/reference/select_model.html | 2 +- docs/reference/sort_output_tbl.html | 2 +- docs/reference/statespace_ch.html | 2 +- docs/reference/statespace_ed.html | 2 +- docs/reference/summary_sc.html | 2 +- docs/reference/test_interaction.html | 2 +- docs/reference/test_tac.html | 2 +- docs/reference/thresh_gam.html | 2 +- 65 files changed, 89 insertions(+), 66 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index b9cd0db..0941024 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: INDperform Title: Evaluation of Indicator Performances for Assessing Ecosystem States Type: Package -Version: 0.2.0.9000 +Version: 0.2.1 Authors@R: c( person("Saskia A.", "Otto", email = "saskia.a.otto@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7780-1322") ), diff --git a/cran-comments.md b/cran-comments.md index 937919b..f8533bc 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -8,12 +8,26 @@ Fixed the warning caused by changes in the random sampling algorithm when callin ## Test environments * macOS 10.14.5 on local install, R 3.6.1 -* ubuntu 14.04 on travis-ci (R-devel, R-release, R-oldrelease) +* ubuntu 16.04 on travis-ci (R-devel, R-release, R-oldrelease) * win-builder (R-devel, R-release, R-oldrelease) ## R CMD check results -There were no ERRORs, WARNINGs or NOTEs. +There were no ERRORs or WARNINGs but 1 NOTE: + +"New submission + +Package was archived on CRAN + +Possibly mis-spelled words in DESCRIPTION: + al (13:76) + et (13:73) + +CRAN repository db overrides: + X-CRAN-Comment: Archived on 2019-04-22 as check errors were not + corrected despite reminders. " + +I am referring to my paper Otto et al. (2018) in the Description section and don't know how to write it in a way to not receive a note. ## Reverse dependencies diff --git a/docs/404.html b/docs/404.html index adbde28..c3eadd5 100644 --- a/docs/404.html +++ b/docs/404.html @@ -75,7 +75,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/authors.html b/docs/authors.html index 0bc6ae3..72407cd 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -75,7 +75,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/index.html b/docs/index.html index 397a519..821ba3e 100644 --- a/docs/index.html +++ b/docs/index.html @@ -45,7 +45,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/news/index.html b/docs/news/index.html index 98f58d1..943bb87 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -75,7 +75,7 @@ INDperform - 0.2.0.9000 + 0.2.1 @@ -150,6 +150,14 @@

Changelog

Source: NEWS.md +
+

+INDperform 0.2.1 Unreleased +

+ +

INDperform 0.2.0 2019-02-10 @@ -216,6 +224,7 @@

Contents

    +
  • 0.2.1
  • 0.2.0
  • 0.1.1
  • 0.1.0
    • diff --git a/docs/reference/INDperform-package.html b/docs/reference/INDperform-package.html index 7f5f53d..400937f 100644 --- a/docs/reference/INDperform-package.html +++ b/docs/reference/INDperform-package.html @@ -81,7 +81,7 @@ INDperform - 0.2.0.9000 + 0.2.1
diff --git a/docs/reference/all_results_ex.html b/docs/reference/all_results_ex.html index d540f1a..60317ca 100644 --- a/docs/reference/all_results_ex.html +++ b/docs/reference/all_results_ex.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1

diff --git a/docs/reference/approx_deriv.html b/docs/reference/approx_deriv.html index 49c1291..07ee136 100644 --- a/docs/reference/approx_deriv.html +++ b/docs/reference/approx_deriv.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/calc_deriv.html b/docs/reference/calc_deriv.html index 71c7f5d..2625e32 100644 --- a/docs/reference/calc_deriv.html +++ b/docs/reference/calc_deriv.html @@ -94,7 +94,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/calc_nrmse.html b/docs/reference/calc_nrmse.html index e181f82..ebdf8de 100644 --- a/docs/reference/calc_nrmse.html +++ b/docs/reference/calc_nrmse.html @@ -81,7 +81,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/calc_pred.html b/docs/reference/calc_pred.html index 08563d1..a413304 100644 --- a/docs/reference/calc_pred.html +++ b/docs/reference/calc_pred.html @@ -82,7 +82,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/check_ind_press.html b/docs/reference/check_ind_press.html index c72ffc6..832776b 100644 --- a/docs/reference/check_ind_press.html +++ b/docs/reference/check_ind_press.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/check_input_tbl.html b/docs/reference/check_input_tbl.html index fee51fc..11d277f 100644 --- a/docs/reference/check_input_tbl.html +++ b/docs/reference/check_input_tbl.html @@ -81,7 +81,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/check_input_vec.html b/docs/reference/check_input_vec.html index 0c7f3a1..70677fd 100644 --- a/docs/reference/check_input_vec.html +++ b/docs/reference/check_input_vec.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/clust_sc.html b/docs/reference/clust_sc.html index 58436c0..3daf588 100644 --- a/docs/reference/clust_sc.html +++ b/docs/reference/clust_sc.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/compare_thresholds.html b/docs/reference/compare_thresholds.html index e6e5823..2cbb117 100644 --- a/docs/reference/compare_thresholds.html +++ b/docs/reference/compare_thresholds.html @@ -82,7 +82,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/cond_boot.html b/docs/reference/cond_boot.html index c639804..5dd3fc0 100644 --- a/docs/reference/cond_boot.html +++ b/docs/reference/cond_boot.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/cooks_dist_gamm.html b/docs/reference/cooks_dist_gamm.html index e2c9047..d125e37 100644 --- a/docs/reference/cooks_dist_gamm.html +++ b/docs/reference/cooks_dist_gamm.html @@ -81,7 +81,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/crit_scores_tmpl.html b/docs/reference/crit_scores_tmpl.html index 9abb53f..131cd69 100644 --- a/docs/reference/crit_scores_tmpl.html +++ b/docs/reference/crit_scores_tmpl.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/dist_sc.html b/docs/reference/dist_sc.html index 6a51717..e207b41 100644 --- a/docs/reference/dist_sc.html +++ b/docs/reference/dist_sc.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/dist_sc_group.html b/docs/reference/dist_sc_group.html index aa47874..6dcc69f 100644 --- a/docs/reference/dist_sc_group.html +++ b/docs/reference/dist_sc_group.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/expect_resp.html b/docs/reference/expect_resp.html index 4cb951a..b123197 100644 --- a/docs/reference/expect_resp.html +++ b/docs/reference/expect_resp.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/find_id.html b/docs/reference/find_id.html index 53a621a..c3059a6 100644 --- a/docs/reference/find_id.html +++ b/docs/reference/find_id.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/get_signif_code.html b/docs/reference/get_signif_code.html index 3098d28..0766a24 100644 --- a/docs/reference/get_signif_code.html +++ b/docs/reference/get_signif_code.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/get_sum_output.html b/docs/reference/get_sum_output.html index 6fef86d..51c0bcd 100644 --- a/docs/reference/get_sum_output.html +++ b/docs/reference/get_sum_output.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/ind_ex.html b/docs/reference/ind_ex.html index cc56b2e..624584a 100644 --- a/docs/reference/ind_ex.html +++ b/docs/reference/ind_ex.html @@ -77,7 +77,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/ind_init.html b/docs/reference/ind_init.html index d6803df..c43fef3 100644 --- a/docs/reference/ind_init.html +++ b/docs/reference/ind_init.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/ind_init_ex.html b/docs/reference/ind_init_ex.html index fd48a56..66665ef 100644 --- a/docs/reference/ind_init_ex.html +++ b/docs/reference/ind_init_ex.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/index.html b/docs/reference/index.html index afed4a5..bf4a27f 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -75,7 +75,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/is_value.html b/docs/reference/is_value.html index ea0c344..95f8fbb 100644 --- a/docs/reference/is_value.html +++ b/docs/reference/is_value.html @@ -84,7 +84,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/loocv_thresh_gam.html b/docs/reference/loocv_thresh_gam.html index 441e2da..b34f70b 100644 --- a/docs/reference/loocv_thresh_gam.html +++ b/docs/reference/loocv_thresh_gam.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/merge_models.html b/docs/reference/merge_models.html index 1a6b009..0b69b3d 100644 --- a/docs/reference/merge_models.html +++ b/docs/reference/merge_models.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/merge_models_ex.html b/docs/reference/merge_models_ex.html index 22451a0..acf016b 100644 --- a/docs/reference/merge_models_ex.html +++ b/docs/reference/merge_models_ex.html @@ -82,7 +82,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/model_gam.html b/docs/reference/model_gam.html index 1ab1f7c..11890c3 100644 --- a/docs/reference/model_gam.html +++ b/docs/reference/model_gam.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/model_gam_ex.html b/docs/reference/model_gam_ex.html index 3c9b564..0f1bbd8 100644 --- a/docs/reference/model_gam_ex.html +++ b/docs/reference/model_gam_ex.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/model_gamm.html b/docs/reference/model_gamm.html index 4ec4676..73eb03a 100644 --- a/docs/reference/model_gamm.html +++ b/docs/reference/model_gamm.html @@ -81,7 +81,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/model_gamm_ex.html b/docs/reference/model_gamm_ex.html index cd4a63f..2d4bdcc 100644 --- a/docs/reference/model_gamm_ex.html +++ b/docs/reference/model_gamm_ex.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/model_trend.html b/docs/reference/model_trend.html index 25d4a2f..2e3e8e9 100644 --- a/docs/reference/model_trend.html +++ b/docs/reference/model_trend.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/model_trend_ex.html b/docs/reference/model_trend_ex.html index 0df90f8..2efe51b 100644 --- a/docs/reference/model_trend_ex.html +++ b/docs/reference/model_trend_ex.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/nrmse.html b/docs/reference/nrmse.html index 2346a13..b64eb99 100644 --- a/docs/reference/nrmse.html +++ b/docs/reference/nrmse.html @@ -81,7 +81,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/pipe.html b/docs/reference/pipe.html index a63fce0..7d06069 100644 --- a/docs/reference/pipe.html +++ b/docs/reference/pipe.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/place_text.html b/docs/reference/place_text.html index 0852249..6fe0b1e 100644 --- a/docs/reference/place_text.html +++ b/docs/reference/place_text.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_clust_sc.html b/docs/reference/plot_clust_sc.html index 3da603a..f7d02d6 100644 --- a/docs/reference/plot_clust_sc.html +++ b/docs/reference/plot_clust_sc.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_diagnostics.html b/docs/reference/plot_diagnostics.html index e464dd3..fc5f13a 100644 --- a/docs/reference/plot_diagnostics.html +++ b/docs/reference/plot_diagnostics.html @@ -82,7 +82,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_model.html b/docs/reference/plot_model.html index 3a95c85..f0813c6 100644 --- a/docs/reference/plot_model.html +++ b/docs/reference/plot_model.html @@ -82,7 +82,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_outline.html b/docs/reference/plot_outline.html index 48946f0..11ca94f 100644 --- a/docs/reference/plot_outline.html +++ b/docs/reference/plot_outline.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_spie.html b/docs/reference/plot_spie.html index ea0db2e..0aaca07 100644 --- a/docs/reference/plot_spie.html +++ b/docs/reference/plot_spie.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_spiechart.html b/docs/reference/plot_spiechart.html index 8e45a50..d014ce4 100644 --- a/docs/reference/plot_spiechart.html +++ b/docs/reference/plot_spiechart.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_statespace_ch.html b/docs/reference/plot_statespace_ch.html index 3d0dd35..6569903 100644 --- a/docs/reference/plot_statespace_ch.html +++ b/docs/reference/plot_statespace_ch.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_statespace_ed.html b/docs/reference/plot_statespace_ed.html index fcf140e..718d985 100644 --- a/docs/reference/plot_statespace_ed.html +++ b/docs/reference/plot_statespace_ed.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_thresh.html b/docs/reference/plot_thresh.html index ca3a8da..9fb7b5e 100644 --- a/docs/reference/plot_thresh.html +++ b/docs/reference/plot_thresh.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/plot_trend.html b/docs/reference/plot_trend.html index eeb7ab3..d48f0f8 100644 --- a/docs/reference/plot_trend.html +++ b/docs/reference/plot_trend.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/press_ex.html b/docs/reference/press_ex.html index b02c02c..676fb2a 100644 --- a/docs/reference/press_ex.html +++ b/docs/reference/press_ex.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/press_type_ex.html b/docs/reference/press_type_ex.html index d85937b..fb838d7 100644 --- a/docs/reference/press_type_ex.html +++ b/docs/reference/press_type_ex.html @@ -77,7 +77,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/scoring.html b/docs/reference/scoring.html index 44fd2ff..c830367 100644 --- a/docs/reference/scoring.html +++ b/docs/reference/scoring.html @@ -78,7 +78,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/select_interaction.html b/docs/reference/select_interaction.html index 415b110..9f4b3f7 100644 --- a/docs/reference/select_interaction.html +++ b/docs/reference/select_interaction.html @@ -82,7 +82,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/select_model.html b/docs/reference/select_model.html index dfb2a14..bf73649 100644 --- a/docs/reference/select_model.html +++ b/docs/reference/select_model.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/sort_output_tbl.html b/docs/reference/sort_output_tbl.html index be57b0b..34c2cc4 100644 --- a/docs/reference/sort_output_tbl.html +++ b/docs/reference/sort_output_tbl.html @@ -81,7 +81,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/statespace_ch.html b/docs/reference/statespace_ch.html index f94128b..6b20cb7 100644 --- a/docs/reference/statespace_ch.html +++ b/docs/reference/statespace_ch.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/statespace_ed.html b/docs/reference/statespace_ed.html index a7cfd50..03976d9 100644 --- a/docs/reference/statespace_ed.html +++ b/docs/reference/statespace_ed.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/summary_sc.html b/docs/reference/summary_sc.html index 7a3ce2a..1b43830 100644 --- a/docs/reference/summary_sc.html +++ b/docs/reference/summary_sc.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/test_interaction.html b/docs/reference/test_interaction.html index e0b9470..00356c7 100644 --- a/docs/reference/test_interaction.html +++ b/docs/reference/test_interaction.html @@ -79,7 +79,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/test_tac.html b/docs/reference/test_tac.html index 6140e19..85fd7f7 100644 --- a/docs/reference/test_tac.html +++ b/docs/reference/test_tac.html @@ -80,7 +80,7 @@ INDperform - 0.2.0.9000 + 0.2.1 diff --git a/docs/reference/thresh_gam.html b/docs/reference/thresh_gam.html index 9b91ccb..6774bc4 100644 --- a/docs/reference/thresh_gam.html +++ b/docs/reference/thresh_gam.html @@ -85,7 +85,7 @@ INDperform - 0.2.0.9000 + 0.2.1