From 7647b370b198cfa36772aa7c536f555b930fbb2d Mon Sep 17 00:00:00 2001
From: Sanjay C Nagi <sanjay.c.nagi@gmail.com>
Date: Thu, 31 Oct 2024 14:22:15 +0000
Subject: [PATCH] fix

---
 workflow/scripts/AncestryInformativeMarkers.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/scripts/AncestryInformativeMarkers.py b/workflow/scripts/AncestryInformativeMarkers.py
index 5686914..e7763eb 100644
--- a/workflow/scripts/AncestryInformativeMarkers.py
+++ b/workflow/scripts/AncestryInformativeMarkers.py
@@ -38,7 +38,7 @@
 
     # read in and filter data
     path = f"results/variantAnalysis/vcfs/{dataset}.{contig}.vcf.gz"
-    vcf, geno, acsubpops, pos, depth, snpeff, subpops, pops =  rnaseqpop.readAndFilterVcf(path=path,
+    vcf, geno, acsubpops, pos, alts, depth, snpeff, subpops, pops =  rnaseqpop.readAndFilterVcf(path=path,
                                                                contig=contig,
                                                                samples=metadata,
                                                                ploidy=ploidy,