diff --git a/workflow/scripts/AncestryInformativeMarkers.py b/workflow/scripts/AncestryInformativeMarkers.py index 5686914..e7763eb 100644 --- a/workflow/scripts/AncestryInformativeMarkers.py +++ b/workflow/scripts/AncestryInformativeMarkers.py @@ -38,7 +38,7 @@ # read in and filter data path = f"results/variantAnalysis/vcfs/{dataset}.{contig}.vcf.gz" - vcf, geno, acsubpops, pos, depth, snpeff, subpops, pops = rnaseqpop.readAndFilterVcf(path=path, + vcf, geno, acsubpops, pos, alts, depth, snpeff, subpops, pops = rnaseqpop.readAndFilterVcf(path=path, contig=contig, samples=metadata, ploidy=ploidy,