From 805620b5dee7185dd9e5e4f3a409208fdf66c03a Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 25 Nov 2024 11:09:22 -0600 Subject: [PATCH 1/2] fix(#3297): Update warning message for pytest-workflow --- nf_core/subworkflows/lint/subworkflow_tests.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/subworkflows/lint/subworkflow_tests.py b/nf_core/subworkflows/lint/subworkflow_tests.py index 7ca825f04..8e9e62430 100644 --- a/nf_core/subworkflows/lint/subworkflow_tests.py +++ b/nf_core/subworkflows/lint/subworkflow_tests.py @@ -50,7 +50,7 @@ def subworkflow_tests(_, subworkflow: NFCoreComponent): subworkflow.warned.append( ( "test_dir_exists", - "nf-test directory is missing", + "Migrate pytest-workflow to nf-test", subworkflow.nftest_testdir, ) ) From c23af55faa65b9f4bc6735917bdcbb77acdc500e Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Thu, 5 Dec 2024 15:19:54 +0000 Subject: [PATCH 2/2] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index fed991f85..3272db6c7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -26,6 +26,7 @@ ### Subworkflows - Add `nf-core subworkflows patch` command ([#2861](https://github.com/nf-core/tools/pull/2861)) +- Improve subworkflow nf-test migration warning ([#3298](https://github.com/nf-core/tools/pull/3298)) ### General