From 15b044d1b3a1a29b2406d42b5c791fd40e96ce9b Mon Sep 17 00:00:00 2001
From: mashehu <mashehu3@gmail.com>
Date: Tue, 10 Dec 2024 15:15:26 +0100
Subject: [PATCH] change working dir when setting defaultBranch

---
 .github/workflows/sync.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/sync.yml b/.github/workflows/sync.yml
index 2a5066397..c315fdb14 100644
--- a/.github/workflows/sync.yml
+++ b/.github/workflows/sync.yml
@@ -89,10 +89,12 @@ jobs:
 
       - name: Set Git default branch from nextflow.config and set git default branch to that or "master"
         run: |
-          defaultBranch=$(grep -B5 -A5 "nextflowVersion" nf-core/${{ matrix.pipeline }}/nextflow.config | grep "defaultBranch" | cut -d"=" -f2)
+          cd nf-core/${{ matrix.pipeline }}
+          defaultBranch=$(grep -B5 -A5 "nextflowVersion" nextflow.config | grep "defaultBranch" | cut -d"=" -f2)
           if [ -z "$defaultBranch" ]; then
             defaultBranch="master"
           fi
+          echo "Default branch: $defaultBranch"
           git config --global init.defaultBranch $defaultBranch
 
       - name: Run synchronisation