From 98db65e774df0a4b25736ab14654354f8a5a1430 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E2=80=9Ckpepper=E2=80=9D?= Date: Mon, 21 Oct 2019 14:50:38 +0100 Subject: [PATCH 1/3] Incremented the version number --- VERSION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/VERSION b/VERSION index 17e51c3..b1e80bb 100644 --- a/VERSION +++ b/VERSION @@ -1 +1 @@ -0.1.1 +0.1.3 From 51eeed42da6934df50a7bb88d3d4b78e6fb4e16e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E2=80=9Ckpepper=E2=80=9D?= Date: Mon, 21 Oct 2019 14:51:53 +0100 Subject: [PATCH 2/3] Regenerated change log --- CHANGELOG.md | 27 +++++++++++++++++++++++++-- 1 file changed, 25 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 77cb43b..fd9c9d3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,11 +1,32 @@ # Change Log -## [Unreleased](https://github.com/sanger-pathogens/gffmunger/tree/HEAD) +## [v0.1.3](https://github.com/sanger-pathogens/gffmunger/tree/v0.1.3) (2019-10-21) +[Full Changelog](https://github.com/sanger-pathogens/gffmunger/compare/v0.1.2...v0.1.3) -[Full Changelog](https://github.com/sanger-pathogens/gffmunger/compare/v0.0.1...HEAD) +- RT673529 - added missing locales to Docker file + +## [v0.1.2](https://github.com/sanger-pathogens/gffmunger/tree/v0.1.2) (2019-07-10) +[Full Changelog](https://github.com/sanger-pathogens/gffmunger/compare/v0.1.1...v0.1.2) + +**Merged pull requests:** + +- Tweak config for farm4 [\#9](https://github.com/sanger-pathogens/gffmunger/pull/9) ([trstickland](https://github.com/trstickland)) + +## [v0.1.1](https://github.com/sanger-pathogens/gffmunger/tree/v0.1.1) (2019-07-09) +[Full Changelog](https://github.com/sanger-pathogens/gffmunger/compare/v0.1...v0.1.1) **Merged pull requests:** +- hotfix for config file environment variable [\#8](https://github.com/sanger-pathogens/gffmunger/pull/8) ([trstickland](https://github.com/trstickland)) +- Sensible default and an ENV variable to set configuration file path [\#7](https://github.com/sanger-pathogens/gffmunger/pull/7) ([trstickland](https://github.com/trstickland)) + +## [v0.1](https://github.com/sanger-pathogens/gffmunger/tree/v0.1) (2019-07-08) +[Full Changelog](https://github.com/sanger-pathogens/gffmunger/compare/v0.0.1...v0.1) + +**Merged pull requests:** + +- Dockerfile and addition of optional commands [\#6](https://github.com/sanger-pathogens/gffmunger/pull/6) ([trstickland](https://github.com/trstickland)) +- Added changelog [\#5](https://github.com/sanger-pathogens/gffmunger/pull/5) ([ssjunnebo](https://github.com/ssjunnebo)) - update readme [\#4](https://github.com/sanger-pathogens/gffmunger/pull/4) ([ssjunnebo](https://github.com/ssjunnebo)) - documentation tweak [\#3](https://github.com/sanger-pathogens/gffmunger/pull/3) ([trstickland](https://github.com/trstickland)) - genometools path [\#2](https://github.com/sanger-pathogens/gffmunger/pull/2) ([trstickland](https://github.com/trstickland)) @@ -13,3 +34,5 @@ ## [v0.0.1](https://github.com/sanger-pathogens/gffmunger/tree/v0.0.1) (2018-08-14) + +\* *This Change Log was automatically generated by [github_changelog_generator](https://github.com/skywinder/Github-Changelog-Generator)* From 643553631c1258dc88b470997c28f62e97491111 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E2=80=9Ckpepper=E2=80=9D?= Date: Mon, 21 Oct 2019 14:52:43 +0100 Subject: [PATCH 3/3] Added locales to fix RT 673529 --- Dockerfile | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 393dda7..00f34f1 100644 --- a/Dockerfile +++ b/Dockerfile @@ -7,7 +7,12 @@ ENV BUILD_DIR /gffmunger-build ENV CONF_DIR /etc/gffmunger RUN apt-get update -qq -RUN apt-get install -y genometools git python3 python-setuptools python3-biopython python3-pip +RUN apt-get install -y locales genometools git python3 python-setuptools python3-biopython python3-pip + +# Configure locales. +# Select a specific locale by passing the LANG variable into docker run. +RUN cp /usr/share/i18n/SUPPORTED /etc/locale.gen +RUN locale-gen # RUN pip3 install dumper gffutils pyyaml