diff --git a/SAMv1.tex b/SAMv1.tex index c1d76d1a..5470b23e 100644 --- a/SAMv1.tex +++ b/SAMv1.tex @@ -737,6 +737,7 @@ \section{Recommended Practice for the SAM Format} \item Unmapped reads should be stored in the orientation in which they came off the sequencing machine and have their {\sf reverse} flag bit~(0x10) correspondingly unset. + \item Unmapped reads should have mapping quality zero. \end{enumerate} \item Multiple mapping \begin{enumerate}[label=\arabic*]