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pr-pdfs.yaml
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SAM: add a sentence on case-insensitivity of RG PL (PR #684) Handle PDF pull request #107: Pull request #684 synchronize by jmarshall
November 5, 2024 15:10 1m 47s jkbonfield:PL-case
jkbonfield:PL-case
November 5, 2024 15:10 1m 47s
Explicitly permit eg N+m in MM tag (PR#799) Handle PDF pull request #106: Pull request #799 opened by jkbonfield
October 28, 2024 11:30 1m 40s jkbonfield:fix_785
jkbonfield:fix_785
October 28, 2024 11:30 1m 40s
Test updated actions Handle PDF pull request #105: Pull request #795 opened by jmarshall
October 1, 2024 08:56 1m 37s jmarshall:actions
jmarshall:actions
October 1, 2024 08:56 1m 37s
Set off example tabular environment with the usual spacing [formatting] Handle PDF pull request #104: Pull request #794 opened by jmarshall
September 30, 2024 22:40 1m 41s jmarshall:example-formatting
jmarshall:example-formatting
September 30, 2024 22:40 1m 41s
Add an MN:i tag (number of SEQ bases at time of modification tag update). Handle PDF pull request #103: Pull request #714 synchronize by jkbonfield
September 9, 2024 08:36 1m 39s jkbonfield:MZi
jkbonfield:MZi
September 9, 2024 08:36 1m 39s
Add an MN:i tag (number of SEQ bases at time of modification tag update). Handle PDF pull request #102: Pull request #714 synchronize by jkbonfield
September 9, 2024 08:35 1m 34s jkbonfield:MZi
jkbonfield:MZi
September 9, 2024 08:35 1m 34s
Add an MN:i tag (number of SEQ bases at time of modification tag update). Handle PDF pull request #101: Pull request #714 synchronize by jmarshall
September 5, 2024 21:32 1m 36s jkbonfield:MZi
jkbonfield:MZi
September 5, 2024 21:32 1m 36s
Fix CRAM pseudocode for handling BAM mapped flag (PR #788) Handle PDF pull request #100: Pull request #788 opened by jkbonfield
September 4, 2024 09:27 1m 41s jkbonfield:cram_mapped_flag
jkbonfield:cram_mapped_flag
September 4, 2024 09:27 1m 41s
Add subtitles noting VCFv4.[1-4].pdf have been superseded by later versions Handle PDF pull request #99: Pull request #782 opened by jmarshall
August 8, 2024 21:40 2m 0s jmarshall:superseded-vcf-specs
jmarshall:superseded-vcf-specs
August 8, 2024 21:40 2m 0s
VCFv4.5 RC2 Handle PDF pull request #96: Pull request #770 synchronize by d-cameron
June 6, 2024 06:43 2m 4s VCFv45_RC2
VCFv45_RC2
June 6, 2024 06:43 2m 4s
VCFv4.5 RC2 Handle PDF pull request #95: Pull request #770 opened by d-cameron
May 29, 2024 07:09 2m 10s VCFv45_RC2
VCFv45_RC2
May 29, 2024 07:09 2m 10s
VCF 4.5 Future of VCF scaling improvements Handle PDF pull request #94: Pull request #758 synchronize by d-cameron
April 20, 2024 10:03 2m 5s vcf45_scaling
vcf45_scaling
April 20, 2024 10:03 2m 5s
VCF 4.5 Future of VCF scaling improvements Handle PDF pull request #93: Pull request #758 synchronize by d-cameron
April 20, 2024 08:47 2m 4s vcf45_scaling
vcf45_scaling
April 20, 2024 08:47 2m 4s
VCF 4.5 Future of VCF scaling improvements Handle PDF pull request #92: Pull request #758 synchronize by d-cameron
April 20, 2024 06:08 2m 9s vcf45_scaling
vcf45_scaling
April 20, 2024 06:08 2m 9s
VCF 4.5 Future of VCF scaling improvements Handle PDF pull request #91: Pull request #758 synchronize by d-cameron
April 20, 2024 06:05 2m 4s vcf45_scaling
vcf45_scaling
April 20, 2024 06:05 2m 4s
VCF 4.5 Future of VCF scaling improvements Handle PDF pull request #90: Pull request #758 synchronize by d-cameron
April 20, 2024 02:19 2m 1s vcf45_scaling
vcf45_scaling
April 20, 2024 02:19 2m 1s
Fix a typo, it should be CN, not CICN Handle PDF pull request #89: Pull request #763 opened by pd3
April 9, 2024 09:36 1m 48s pd3:master
pd3:master
April 9, 2024 09:36 1m 48s
Fix minor typos in the CRAM tag type lists (PR #761) Handle PDF pull request #88: Pull request #761 opened by jkbonfield
March 21, 2024 12:38 1m 53s jkbonfield:CRAM_tag_types
jkbonfield:CRAM_tag_types
March 21, 2024 12:38 1m 53s
VCF 4.5 Future of VCF scaling improvements Handle PDF pull request #87: Pull request #758 synchronize by d-cameron
February 27, 2024 21:06 2m 7s vcf45_scaling
vcf45_scaling
February 27, 2024 21:06 2m 7s
VCF 4.5 Future of VCF scaling improvements Handle PDF pull request #86: Pull request #758 opened by d-cameron
February 27, 2024 17:35 2m 7s vcf45_scaling
vcf45_scaling
February 27, 2024 17:35 2m 7s
Document CRAM FP is delta-encoded Handle PDF pull request #85: Pull request #754 synchronize by jkbonfield
February 22, 2024 16:11 1m 57s jkbonfield:CRAM_FP
jkbonfield:CRAM_FP
February 22, 2024 16:11 1m 57s
Document CRAM FP is delta-encoded Handle PDF pull request #84: Pull request #754 opened by jkbonfield
January 29, 2024 17:12 1m 50s jkbonfield:CRAM_FP
jkbonfield:CRAM_FP
January 29, 2024 17:12 1m 50s
Add SAM recommendation of MAPQ=0 for unmapped reads Handle PDF pull request #83: Pull request #753 opened by jkbonfield
January 29, 2024 16:52 1m 47s jkbonfield:MAPQ0
jkbonfield:MAPQ0
January 29, 2024 16:52 1m 47s
Recommend 1bp SEQ with QUAL="*" as quality-unavailable. Handle PDF pull request #82: Pull request #752 opened by jkbonfield
January 29, 2024 16:43 1m 46s jkbonfield:SAM-1bp-QUAL
jkbonfield:SAM-1bp-QUAL
January 29, 2024 16:43 1m 46s
Define Local Alleles in VCF to allow for sparser format Handle PDF pull request #81: Pull request #434 synchronize by jmarshall
January 2, 2024 22:51 1m 50s yfarjoun:yf_local_alleles
yfarjoun:yf_local_alleles
January 2, 2024 22:51 1m 50s