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The discussion in upstream coreos/fedora-coreos-tracker#181 explains it well enough. I agree with the FCOS choice to default insecure SMT to disabled. It's a pretty significant thing to do, though. I wish they'd surfaced it better in documentation. Maybe even notify the operator of it in /etc/motd on first few boots or something.
I completely switched off CPU mitigations during initial CoreOS bring-up because I realized that half the CPU cores were being forced offline.
I should figure out if there's a way to enable mitigations and have the extra CPU cores.
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