From 475f70a15ee9f6fbd4acabd349ea00246487d08d Mon Sep 17 00:00:00 2001 From: Ben Webb Date: Mon, 30 Sep 2024 12:15:07 -0700 Subject: [PATCH] Prepare for 1.0 release --- ChangeLog.rst | 7 +++++++ modbase_pdb_to_cif.py | 2 +- test/input/output.cif | 2 +- test/input/output_with_align.cif | 2 +- test/input/test_multi_expdta.cif | 2 +- test/input/test_no_chain.cif | 2 +- test/input/test_old_model.cif | 2 +- 7 files changed, 13 insertions(+), 6 deletions(-) diff --git a/ChangeLog.rst b/ChangeLog.rst index 5d58fd1..83ac0df 100644 --- a/ChangeLog.rst +++ b/ChangeLog.rst @@ -1,3 +1,10 @@ +1.0 - 2024-09-30 +================ + - Information about the database sequence for the model (e.g. in + UniProt) is now provided both in the ModelCIF-specific + ``ma_target_ref_db_details`` table and in the more general + ``struct_ref`` table. + 0.5 - 2024-01-12 ================ - New ModBase models containing multiline TITLE records and new-style diff --git a/modbase_pdb_to_cif.py b/modbase_pdb_to_cif.py index 2573d55..95ff849 100755 --- a/modbase_pdb_to_cif.py +++ b/modbase_pdb_to_cif.py @@ -16,7 +16,7 @@ import modelcif.protocol -__version__ = "0.5" +__version__ = "1.0" class RefSeq(modelcif.reference.TargetReference): diff --git a/test/input/output.cif b/test/input/output.cif index ea3d424..3038315 100644 --- a/test/input/output.cif +++ b/test/input/output.cif @@ -63,7 +63,7 @@ program https://salilab.org/modpipe/ . 'Comparative modeling by satisfaction of spatial restraints' SVN program https://salilab.org/modeller/ 2 3 modbase_pdb_to_cif.py 'format conversion' -'Conversion of ModBase PDB and alignment files to mmCIF format' 0.5 program +'Conversion of ModBase PDB and alignment files to mmCIF format' 1.0 program https://github.com/salilab/modbase_utils . # # diff --git a/test/input/output_with_align.cif b/test/input/output_with_align.cif index e1b9245..06b2042 100644 --- a/test/input/output_with_align.cif +++ b/test/input/output_with_align.cif @@ -63,7 +63,7 @@ program https://salilab.org/modpipe/ . 'Comparative modeling by satisfaction of spatial restraints' SVN program https://salilab.org/modeller/ 2 3 modbase_pdb_to_cif.py 'format conversion' -'Conversion of ModBase PDB and alignment files to mmCIF format' 0.5 program +'Conversion of ModBase PDB and alignment files to mmCIF format' 1.0 program https://github.com/salilab/modbase_utils . # # diff --git a/test/input/test_multi_expdta.cif b/test/input/test_multi_expdta.cif index 941e259..6c7070a 100644 --- a/test/input/test_multi_expdta.cif +++ b/test/input/test_multi_expdta.cif @@ -63,7 +63,7 @@ program https://salilab.org/modpipe/ . 'Comparative modeling by satisfaction of spatial restraints' SVN program https://salilab.org/modeller/ 2 3 modbase_pdb_to_cif.py 'format conversion' -'Conversion of ModBase PDB and alignment files to mmCIF format' 0.5 program +'Conversion of ModBase PDB and alignment files to mmCIF format' 1.0 program https://github.com/salilab/modbase_utils . # # diff --git a/test/input/test_no_chain.cif b/test/input/test_no_chain.cif index dba9b7e..c20f855 100644 --- a/test/input/test_no_chain.cif +++ b/test/input/test_no_chain.cif @@ -63,7 +63,7 @@ program https://salilab.org/modpipe/ . 'Comparative modeling by satisfaction of spatial restraints' SVN program https://salilab.org/modeller/ 2 3 modbase_pdb_to_cif.py 'format conversion' -'Conversion of ModBase PDB and alignment files to mmCIF format' 0.5 program +'Conversion of ModBase PDB and alignment files to mmCIF format' 1.0 program https://github.com/salilab/modbase_utils . # # diff --git a/test/input/test_old_model.cif b/test/input/test_old_model.cif index 8a1169d..95c1d0b 100644 --- a/test/input/test_old_model.cif +++ b/test/input/test_old_model.cif @@ -63,7 +63,7 @@ https://salilab.org/modpipe/ . 'Comparative modeling by satisfaction of spatial restraints' CVS program https://salilab.org/modeller/ 2 3 modbase_pdb_to_cif.py 'format conversion' -'Conversion of ModBase PDB and alignment files to mmCIF format' 0.5 program +'Conversion of ModBase PDB and alignment files to mmCIF format' 1.0 program https://github.com/salilab/modbase_utils . # #