From 69aaa21fdbc081ccbb94dd197440117301f0b73e Mon Sep 17 00:00:00 2001
From: sacundim <anybody@sacundim.org>
Date: Sun, 30 Jun 2024 10:51:50 -0700
Subject: [PATCH] Missed the DuckDB template for the Biostatistics flu cases
 download

---
 .../templates/biostatistics/flu-cases.sql.j2  | 23 +++++++++++++++++++
 1 file changed, 23 insertions(+)
 create mode 100644 downloader/src/covid_19_puerto_rico_downloader/templates/biostatistics/flu-cases.sql.j2

diff --git a/downloader/src/covid_19_puerto_rico_downloader/templates/biostatistics/flu-cases.sql.j2 b/downloader/src/covid_19_puerto_rico_downloader/templates/biostatistics/flu-cases.sql.j2
new file mode 100644
index 0000000000..6197404a94
--- /dev/null
+++ b/downloader/src/covid_19_puerto_rico_downloader/templates/biostatistics/flu-cases.sql.j2
@@ -0,0 +1,23 @@
+COPY (
+    SELECT
+        *,
+        TIMESTAMP '{{ downloaded_at }}' AS downloadedAt
+    FROM read_json(
+            '{{ input_file }}',
+            format='array',
+            union_by_name=true,
+            columns={
+                caseId: 'STRING',
+                caseCategory: 'STRING',
+                patientAgeRange: 'STRING',
+                patientSex: 'STRING',
+                patientPhysicalCity: 'STRING',
+                identifyingTestSampleCollectedDate: 'DATE'
+            }
+    )
+    ORDER BY
+        identifyingTestSampleCollectedDate
+)
+TO '{{ output_parquet }}' (
+    FORMAT 'parquet', COMPRESSION 'GZIP'
+);
\ No newline at end of file