quarto render --to html makes some html tags visible in the validation report

[cregouby]

Prework

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Description

From a basic agent , the pointblank report in a quarto html document includes unexpected html tags "<div arial label=" and "<span style=" within the cells :

This appends equally from the Rstudio IDE "Render" button and from the cli "> quarto render reprex.qmd --to html"

The rendering of the same content in a Rmd document do not have the issue.

Reproducible example

---
title: "Untitled"
format: html
---

```{r}
library(pointblank)
library(tibble)
create_agent(
  tibble(iris),
  label = "Iris Dataset") |> 
  col_exists(columns = c("Sepal.Length", "Sepal.Width", "Species")) |> 
  interrogate()

^{Created on 2024-02-28 with reprex v2.1.0}

Expected result

The expected result can be obtained from knitr on the Rmd file equivalent

Session info

^{Created on 2024-02-28 with reprex v2.1.0}

Session info

$ quarto --version
1.5.16

sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value
#>  version  R version 4.3.2 (2023-10-31)
#>  os       Ubuntu 22.04.4 LTS
#>  system   x86_64, linux-gnu
#>  ui       X11
#>  language fr_FR
#>  collate  fr_FR.UTF-8
#>  ctype    fr_FR.UTF-8
#>  tz       Europe/Paris
#>  date     2024-02-28
#>  pandoc   3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package     * version     date (UTC) lib source
#>  blastula      0.3.5       2024-02-24 [3] RSPM (R 4.3.0)
#>  cli           3.6.2       2023-12-11 [1] CRAN (R 4.3.2)
#>  commonmark    1.9.0       2023-03-17 [1] CRAN (R 4.3.0)
#>  digest        0.6.33      2023-07-07 [1] CRAN (R 4.3.1)
#>  dplyr         1.1.4       2023-11-17 [1] CRAN (R 4.3.2)
#>  evaluate      0.23        2023-11-01 [1] CRAN (R 4.3.2)
#>  fansi         1.0.6       2023-12-08 [1] CRAN (R 4.3.2)
#>  fastmap       1.1.1       2023-02-24 [1] CRAN (R 4.3.0)
#>  fs            1.6.3       2023-07-20 [1] CRAN (R 4.3.1)
#>  generics      0.1.3       2022-07-05 [1] CRAN (R 4.3.0)
#>  glue          1.6.2       2022-02-24 [1] CRAN (R 4.3.0)
#>  gt            0.10.1      2024-01-17 [3] RSPM (R 4.3.0)
#>  htmltools     0.5.7       2023-11-03 [1] CRAN (R 4.3.2)
#>  knitr         1.45        2023-10-30 [1] CRAN (R 4.3.2)
#>  lifecycle     1.0.4       2023-11-07 [1] CRAN (R 4.3.2)
#>  magrittr      2.0.3       2022-03-30 [1] CRAN (R 4.3.0)
#>  markdown      1.12        2023-12-06 [1] CRAN (R 4.3.2)
#>  pillar        1.9.0       2023-03-22 [1] CRAN (R 4.3.0)
#>  pkgconfig     2.0.3       2019-09-22 [1] CRAN (R 4.3.0)
#>  pointblank  * 0.11.4.9000 2024-02-27 [1] Github (rstudio/pointblank@28ca29e)
#>  purrr         1.0.2       2023-08-10 [1] CRAN (R 4.3.1)
#>  R.cache       0.16.0      2022-07-21 [1] CRAN (R 4.3.1)
#>  R.methodsS3   1.8.2       2022-06-13 [1] CRAN (R 4.3.1)
#>  R.oo          1.25.0      2022-06-12 [1] CRAN (R 4.3.1)
#>  R.utils       2.12.3      2023-11-18 [1] CRAN (R 4.3.2)
#>  R6            2.5.1       2021-08-19 [1] CRAN (R 4.3.0)
#>  reprex        2.1.0       2024-01-11 [3] RSPM (R 4.3.0)
#>  rlang         1.1.2       2023-11-04 [1] CRAN (R 4.3.2)
#>  rmarkdown     2.25        2023-09-18 [1] CRAN (R 4.3.1)
#>  rstudioapi    0.15.0      2023-07-07 [1] CRAN (R 4.3.1)
#>  sass          0.4.8       2023-12-06 [1] CRAN (R 4.3.2)
#>  sessioninfo   1.2.2       2021-12-06 [1] CRAN (R 4.3.0)
#>  styler        1.10.2      2023-08-29 [1] CRAN (R 4.3.1)
#>  tibble      * 3.2.1       2023-03-20 [1] CRAN (R 4.3.0)
#>  tidyselect    1.2.0       2022-10-10 [1] CRAN (R 4.3.0)
#>  utf8          1.2.4       2023-10-22 [1] CRAN (R 4.3.2)
#>  vctrs         0.6.5       2023-12-01 [1] CRAN (R 4.3.2)
#>  withr         2.5.2       2023-10-30 [1] CRAN (R 4.3.2)
#>  xfun          0.41        2023-11-01 [1] CRAN (R 4.3.2)
#>  xml2          1.3.6       2023-12-04 [1] CRAN (R 4.3.2)
#>  yaml          2.3.8       2023-12-11 [1] CRAN (R 4.3.2)
#> 
#>  [1] /home/creg/R/x86_64-pc-linux-gnu-library/4.3
#>  [2] /usr/local/lib/R/site-library
#>  [3] /usr/lib/R/site-library
#>  [4] /usr/lib/R/library
#> 
#> ──────────────────────────────────────────────────────────────────────────────

[yjunechoe]

This looks like the same issue as rstudio/gt#1488 (and other issues linked within)

Applying a workaround from quarto-dev/quarto-cli#7493, the reprex renders fine on quarto:

library(pointblank)
create_agent(iris) |> 
  col_exists(Sepal.Length) |>
  interrogate() |>
  get_agent_report() |>
  gt::fmt(fns = identity) # `gt::fmt_passthrough(escape = FALSE)` also works here

@rich-iannone Should we apply some sort of a workaround like the above before rendering agent/informant reports, to suppress generation of the data-qmd attribute? Or would you prefer to just fix it upstream in {gt}?

---

On a separate but related note, it looks like <code> inside the report is inheriting the purple color from quarto's theme. I think we should hard code color: black; in the agent's css - here and possibly elsewhere?

pointblank/R/get_agent_report.R

Lines 1952 to 1956 in 28ca29e

	#pb_agent code {
	font-family: 'IBM Plex Mono', monospace, courier;
	background-color: transparent;
	padding: 0;
	}

[rich-iannone]

@yjunechoe I was just exploring this this morning! A bit more work is required upstream in gt to fix rstudio/gt#1488. However, I think we should sidestep that for now and use gt::fmt(fns = identity) wherever needed. Also agree with the replacement of purple code text with black.

Would you be able to handle this? I swear this'll be the last thing before the release :/

[yjunechoe]

No worries! I'd like to see this fixed for this release as well. I'll make a PR!