From 48158e5f557be2e136a5c2ed11a46e3227d7014f Mon Sep 17 00:00:00 2001 From: Karl Broman Date: Wed, 26 Jul 2023 13:30:32 -0500 Subject: [PATCH 1/5] Roxygen -> 7.2.3 --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 410ee9a..4c5f4db 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -26,5 +26,5 @@ LazyData: true Encoding: UTF-8 ByteCompile: true VignetteBuilder: knitr -RoxygenNote: 7.2.1 +RoxygenNote: 7.2.3 Roxygen: list(markdown=TRUE) From f2cadf6806682ce6e5b5b0631f6ff987e222070e Mon Sep 17 00:00:00 2001 From: Karl Broman Date: Wed, 26 Jul 2023 13:33:14 -0500 Subject: [PATCH 2/5] Update URL for GeneNetwork API --- DESCRIPTION | 4 ++-- NEWS.md | 7 +++++++ R/gnapi_url.R | 2 +- 3 files changed, 10 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 4c5f4db..e4dcc0d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: GNapi -Version: 0.3-7 -Date: 2022-10-25 +Version: 0.3-8 +Date: 2023-07-26 Title: Connection to the GeneNetwork API Description: Tools for connecting to the GeneNetwork API. Author: Karl W Broman [aut, cre] () diff --git a/NEWS.md b/NEWS.md index 1f6ce9d..436717b 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,10 @@ +## GNapi 0.3-8 (2023-07-26) + +### Minor changes + +- Updated URL for GeneNetwork API + + ## GNapi 0.3-7 (2022-10-25) ### Bug fixes diff --git a/R/gnapi_url.R b/R/gnapi_url.R index 3e6db34..bc670ea 100644 --- a/R/gnapi_url.R +++ b/R/gnapi_url.R @@ -10,5 +10,5 @@ #' @export gnapi_url <- function() { - "http://gn2.genenetwork.org/api/v_pre1" + "https://genenetwork.org/api/v_pre1" } From 7c178ca226737f4ca461f4634de39419e426f17a Mon Sep 17 00:00:00 2001 From: Karl Broman Date: Wed, 26 Jul 2023 13:37:45 -0500 Subject: [PATCH 3/5] Fix GN URL: http://gn2.genenetwork.org -> https://genenetwork.org --- README.md | 4 +- docs/GNapi.html | 115 ++++++++++++++++++++++---------------------- vignettes/GNapi.Rmd | 2 +- 3 files changed, 60 insertions(+), 61 deletions(-) diff --git a/README.md b/README.md index 1c85a08..0ad13ab 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -## R/GNapi - R package to connect to the [GeneNetwork](http://gn2.genenetwork.org/) API +## R/GNapi - R package to connect to the [GeneNetwork](https://genenetwork.org/) API [![R build status](https://github.com/rqtl/GNapi/workflows/R-CMD-check/badge.svg)](https://github.com/rqtl/GNapi/actions) @@ -24,7 +24,7 @@ Then use `remotes::install_github()` to install R/GNapi. ### Usage For an understanding of the -[GeneNetwork](http://gn2.genenetwork.org) API, see +[GeneNetwork](https://genenetwork.org) API, see [its documentation](https://github.com/genenetwork/genenetwork2/blob/testing/api_readme.md), as well as [Zachary Sloan](https://github.com/zsloan?tab=repositories)'s diff --git a/docs/GNapi.html b/docs/GNapi.html index 051afac..4e5c002 100644 --- a/docs/GNapi.html +++ b/docs/GNapi.html @@ -29,23 +29,23 @@ +code{white-space: pre-wrap;} +span.smallcaps{font-variant: small-caps;} +span.underline{text-decoration: underline;} +div.column{display: inline-block; vertical-align: top; width: 50%;} +div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;} +ul.task-list{list-style: none;} +