From 768df05dc76a8f26e98d403e62720a36febae9e3 Mon Sep 17 00:00:00 2001
From: Karl Broman <kbroman@gmail.com>
Date: Sun, 6 Dec 2020 00:00:03 -0600
Subject: [PATCH] fix typo in arg for run_rqtl()

---
 DESCRIPTION     |  6 +++---
 NEWS.md         |  7 +++++++
 R/run_stuff.R   |  2 +-
 man/run_rqtl.Rd | 14 ++++++++++----
 4 files changed, 21 insertions(+), 8 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 29b55d5..ec57635 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: GNapi
-Version: 0.3-2
-Date: 2019-06-10
+Version: 0.3-3
+Date: 2020-12-06
 Title: Connection to the GeneNetwork API
 Description: Tools for connecting to the GeneNetwork API.
 Author: Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>)
@@ -26,5 +26,5 @@ LazyData: true
 Encoding: UTF-8
 ByteCompile: true
 VignetteBuilder: knitr
-RoxygenNote: 6.1.1
+RoxygenNote: 7.1.1
 Roxygen: list(markdown=TRUE)
diff --git a/NEWS.md b/NEWS.md
index 96c4f75..07aec39 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,10 @@
+## GNapi 0.3-3 (2020-12-06)
+
+### Minor changes
+
+- Fix a typo in an argument option in `run_rqtl()`.
+
+
 ## GNapi 0.3-2 (2019-06-10)
 
 ### Major changes
diff --git a/R/run_stuff.R b/R/run_stuff.R
index 54df5a0..bed2eb0 100644
--- a/R/run_stuff.R
+++ b/R/run_stuff.R
@@ -55,7 +55,7 @@ run_gemma <-
 #' @examples
 #' out <- run_rqtl("BXDPublish", "10015")
 run_rqtl <-
-    function(dataset, trait, method=c("hk", "ehk", "em", "imp", "mr", "mr-imp[", "mr-argmax"),
+    function(dataset, trait, method=c("hk", "ehk", "em", "imp", "mr", "mr-imp", "mr-argmax"),
              model=c("normal", "binary", "2part", "np"),
              n_perm=0, control_marker=NULL, interval_mapping=FALSE,
              url=gnapi_url())
diff --git a/man/run_rqtl.Rd b/man/run_rqtl.Rd
index 60a84d7..710004b 100644
--- a/man/run_rqtl.Rd
+++ b/man/run_rqtl.Rd
@@ -4,10 +4,16 @@
 \alias{run_rqtl}
 \title{Run R/qtl}
 \usage{
-run_rqtl(dataset, trait, method = c("hk", "ehk", "em", "imp", "mr",
-  "mr-imp[", "mr-argmax"), model = c("normal", "binary", "2part", "np"),
-  n_perm = 0, control_marker = NULL, interval_mapping = FALSE,
-  url = gnapi_url())
+run_rqtl(
+  dataset,
+  trait,
+  method = c("hk", "ehk", "em", "imp", "mr", "mr-imp", "mr-argmax"),
+  model = c("normal", "binary", "2part", "np"),
+  n_perm = 0,
+  control_marker = NULL,
+  interval_mapping = FALSE,
+  url = gnapi_url()
+)
 }
 \arguments{
 \item{dataset}{ID for dataset being used (\code{Short_Abbreviation})}