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gatk
gatk PublicForked from broadinstitute/gatk
Official code repository for GATK versions 4 and up
Java
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magpie
magpie PublicForked from LLNL/magpie
Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, and more.
Shell
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cromwell
cromwell PublicForked from broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Scala
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CromwellOnAzure
CromwellOnAzure PublicForked from microsoft/CromwellOnAzure
Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure
C#
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