From f3cc25344cf0ff922d6be56ca6603d2dbc54305e Mon Sep 17 00:00:00 2001 From: Qin Yu Date: Mon, 26 Feb 2024 20:29:17 +0100 Subject: [PATCH] Skip CuPy v13.0.* due to broken `ElementwiseKernel` and other core CuPy kernels. Related Issues: - https://github.com/cupy/cupy/issues/8184 - https://github.com/cupy/cupy/issues/8155 - https://github.com/AdvancedPhotonSource/tike/pull/302 --- examples/flow_field_3d/environment_gpu.yml | 4 ++-- examples/micro_sam/environment_gpu.yml | 2 +- examples/multi_color_ensemble/environment_gpu.yml | 2 +- examples/neuromast_plantseg/environment_gpu.yml | 2 +- examples/stardist_2d/environment_gpu.yml | 2 +- examples/zebrahub/environment_gpu.yml | 2 +- 6 files changed, 7 insertions(+), 7 deletions(-) diff --git a/examples/flow_field_3d/environment_gpu.yml b/examples/flow_field_3d/environment_gpu.yml index a35a5b1..f4e6f32 100644 --- a/examples/flow_field_3d/environment_gpu.yml +++ b/examples/flow_field_3d/environment_gpu.yml @@ -9,13 +9,13 @@ channels: dependencies: - coin-or-cbc - cucim - - cupy + - cupy!=13.0.* - gurobi - jupyter + - napari - pip - pyqt - pytorch - pytorch-cuda - pip: - - napari==0.4.18 - traccuracy diff --git a/examples/micro_sam/environment_gpu.yml b/examples/micro_sam/environment_gpu.yml index 6f4c177..4d30826 100644 --- a/examples/micro_sam/environment_gpu.yml +++ b/examples/micro_sam/environment_gpu.yml @@ -9,7 +9,7 @@ channels: dependencies: - coin-or-cbc - cucim - - cupy + - cupy!=13.0.* - gurobi - jupyter - pip diff --git a/examples/multi_color_ensemble/environment_gpu.yml b/examples/multi_color_ensemble/environment_gpu.yml index 587bcdb..9ec8595 100644 --- a/examples/multi_color_ensemble/environment_gpu.yml +++ b/examples/multi_color_ensemble/environment_gpu.yml @@ -8,7 +8,7 @@ dependencies: - cellpose - coin-or-cbc - cucim - - cupy + - cupy!=13.0.* - gurobi - jupyter - pip diff --git a/examples/neuromast_plantseg/environment_gpu.yml b/examples/neuromast_plantseg/environment_gpu.yml index 929bd71..1c68ba5 100644 --- a/examples/neuromast_plantseg/environment_gpu.yml +++ b/examples/neuromast_plantseg/environment_gpu.yml @@ -9,7 +9,7 @@ channels: dependencies: - coin-or-cbc - cucim - - cupy + - cupy!=13.0.* - gurobi - jupyter - pyqt diff --git a/examples/stardist_2d/environment_gpu.yml b/examples/stardist_2d/environment_gpu.yml index e6a4bc6..4b8d0a0 100644 --- a/examples/stardist_2d/environment_gpu.yml +++ b/examples/stardist_2d/environment_gpu.yml @@ -10,7 +10,7 @@ dependencies: - conda-forge::cudatoolkit=11.2 - conda-forge::cudnn=8.4.1 - conda-forge::tensorflow-gpu=2.11.0 - - conda-forge::cupy + - conda-forge::cupy!=13.0.* - coin-or-cbc - gurobi - jupyter diff --git a/examples/zebrahub/environment_gpu.yml b/examples/zebrahub/environment_gpu.yml index 1782083..e4e4d19 100644 --- a/examples/zebrahub/environment_gpu.yml +++ b/examples/zebrahub/environment_gpu.yml @@ -7,7 +7,7 @@ channels: dependencies: - coin-or-cbc - cucim - - cupy + - cupy!=13.0.* - gurobi - jupyter - pip