diff --git a/README.md b/README.md index efd77ea..fb74b8c 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ Install [conda](https://docs.conda.io/projects/conda/en/latest/user-guide/instal Create a conda environment. ```bash -conda create --name tracking python=3.10 +conda create --name tracking -c conda-forge python=3.10 pyqt ``` And activate it. diff --git a/docs/source/faq.rst b/docs/source/faq.rst index 29ecb76..091f840 100644 --- a/docs/source/faq.rst +++ b/docs/source/faq.rst @@ -3,3 +3,6 @@ FAQ **Q: What is each configuration parameters for?** A: See the `configuration README `_. + +**Q: What to do when Qt platform plugin cannot be initialized?** + A: The solution to try is to install `pyqt` using `conda` from the `-c conda-forge` channel. diff --git a/examples/README.md b/examples/README.md index 6b2c7c9..dd25d38 100644 --- a/examples/README.md +++ b/examples/README.md @@ -6,6 +6,7 @@ Therefore, conda environment files are provided, they can be installed using: ``` conda env create -f conda activate +pip install git+https://github.com/royerlab/ultrack ``` The existing examples are: diff --git a/examples/neuromast_plantseg/environment_cpu.yml b/examples/neuromast_plantseg/environment_cpu.yml index f6a90bb..a183037 100644 --- a/examples/neuromast_plantseg/environment_cpu.yml +++ b/examples/neuromast_plantseg/environment_cpu.yml @@ -1,11 +1,10 @@ -name: ultrack-flow-field +name: ultrack-plant-seg channels: - pytorch - gurobi - rapidsai - conda-forge - defaults - - lcerrone dependencies: - coin-or-cbc - cucim @@ -13,10 +12,8 @@ dependencies: - cpuonly - gurobi - jupyter - - pip - - plantseg - pyqt - pytorch - - pip: - - napari==0.4.18 - - napari-ome-zarr + - plant-seg + - napari + - napari-ome-zarr diff --git a/examples/neuromast_plantseg/environment_gpu.yml b/examples/neuromast_plantseg/environment_gpu.yml index f1f4dd3..929bd71 100644 --- a/examples/neuromast_plantseg/environment_gpu.yml +++ b/examples/neuromast_plantseg/environment_gpu.yml @@ -6,18 +6,16 @@ channels: - rapidsai - conda-forge - defaults - - lcerrone dependencies: - coin-or-cbc - cucim - cupy - gurobi - jupyter - - pip - pyqt - pytorch - - pytorch-cuda - - plantseg - - pip: - - napari==0.4.18 - - napari-ome-zarr + - pytorch-cuda=12.1 + - cudnn + - plant-seg + - napari + - napari-ome-zarr