diff --git a/README.md b/README.md index f068d82..269af50 100644 --- a/README.md +++ b/README.md @@ -132,10 +132,10 @@ This project is licensed under the BSD-3 License - see the [LICENSE](LICENSE) fi ## Citing -If you use ultrack in your research, please cite the following [paper](https://arxiv.org/pdf/2308.04526): +If you use `ultrack` in your research, please cite the following papers, [the algorithm](https://arxiv.org/pdf/2308.04526) and [the biological applications and software](https://www.biorxiv.org/content/10.1101/2024.09.02.610652). ``` -@misc{bragantini2023ucmtracking, +@article{bragantini2023ucmtracking, title={Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps}, author={Jordão Bragantini and Merlin Lange and Loïc Royer}, year={2023}, @@ -143,8 +143,18 @@ If you use ultrack in your research, please cite the following [paper](https://a archivePrefix={arXiv}, primaryClass={cs.CV} } + +@article{bragantini2024ultrack, + title={Ultrack: pushing the limits of cell tracking across biological scales}, + author={Bragantini, Jordao and Theodoro, Ilan and Zhao, Xiang and Huijben, Teun APM and Hirata-Miyasaki, Eduardo and VijayKumar, Shruthi and Balasubramanian, Akilandeswari and Lao, Tiger and Agrawal, Richa and Xiao, Sheng and others}, + journal={bioRxiv}, + pages={2024--09}, + year={2024}, + publisher={Cold Spring Harbor Laboratory} +} ``` -Include citations for auxiliary methods (e.g., Cellpose, napari) depending on your usage. + +And the respective auxiliary methods (e.g. Cellpose, napari, etc) depending on your usage. ## Acknowledgements diff --git a/docs/source/index.rst b/docs/source/index.rst index 2958437..d28c6b7 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -80,7 +80,7 @@ Zebrafish imaged using `DaXi `_ and `the biological applications and software `_. .. code-block:: bibtex @@ -93,6 +93,15 @@ If you use ``ultrack`` in your research, please cite the following paper: primaryClass={cs.CV} } + @article{bragantini2024ultrack, + title={Ultrack: pushing the limits of cell tracking across biological scales}, + author={Bragantini, Jordao and Theodoro, Ilan and Zhao, Xiang and Huijben, Teun APM and Hirata-Miyasaki, Eduardo and VijayKumar, Shruthi and Balasubramanian, Akilandeswari and Lao, Tiger and Agrawal, Richa and Xiao, Sheng and others}, + journal={bioRxiv}, + pages={2024--09}, + year={2024}, + publisher={Cold Spring Harbor Laboratory} + } + And the respective auxiliary methods (e.g. Cellpose, napari, etc) depending on your usage.