Compile MD file #12

	name: "Compile MD file"
	on:
	push:
	branches:
	- main

	jobs:
	compile-and-push:
	permissions: write-all
	runs-on: ubuntu-latest
	steps:
	- name: Checkout imagej.github.io
	uses: actions/checkout@v3
	with:
	repository: 'royerlab/imagej.github.io'
	path: 'imagej.github.io'

	- name: Checkout this repository
	uses: actions/checkout@v3
	with:
	path: 'ultrack-imagej'
	token: ${{ secrets.GITHUB_TOKEN }}

	- name: Find and copy media files
	run: \|
	FILES=$(grep -oP '!\[.?\]$\K.?(?=$)' "imagej.github.io/_pages/plugins/ultrack.md")

	for FILE in $FILES;
	do
	mkdir -p "ultrack-imagej/$(dirname "$FILE")"
	cp "imagej.github.io/$FILE" "ultrack-imagej/$FILE"
	done
	cp imagej.github.io/_pages/plugins/ultrack.md ultrack-imagej/README.md

	- name: Remove ImageJ includes
	run: \|
	cd ultrack-imagej
	sed -i '/^{%/d' README.md
	sed -z -i 's/---.*---//g' README.md
	sed -z -i 's/\/media/media/g' README.md
	{ cat header.md; cat README.md; cat citation.md;} > temp && mv temp README.md


	- name: Commit
	run: \|
	cd ultrack-imagej
	if git diff --exit-code; then
	echo "No changes to commit."
	exit 0
	else
	git config user.name github-actions
	git config user.email [email protected]
	git add .
	git commit -m "Update README.md"
	git push origin main
	fi

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