diff --git a/src/seismicrna/core/arg/cli.py b/src/seismicrna/core/arg/cli.py index 93e1abb0..3552c03e 100644 --- a/src/seismicrna/core/arg/cli.py +++ b/src/seismicrna/core/arg/cli.py @@ -1338,13 +1338,13 @@ opt_verbose = Option( ("--verbose", "-v"), count=True, - help="Log info (-v) or info and debug (-vv) messages on stdout" + help="Log more messages (-v, -vv, or -vvv) on stderr" ) opt_quiet = Option( ("--quiet", "-q"), count=True, - help="Suppress warnings (-q) or warnings and errors (-qq) on stdout" + help="Log fewer messages (-q, -qq, or -qqq) on stderr" ) opt_log = Option( diff --git a/src/seismicrna/core/version.py b/src/seismicrna/core/version.py index 1ae6e349..19283039 100644 --- a/src/seismicrna/core/version.py +++ b/src/seismicrna/core/version.py @@ -1,7 +1,7 @@ import re -__version__ = "0.21.0" +__version__ = "0.21.1" def parse_version(version: str = __version__): diff --git a/src/seismicrna/mask/write.py b/src/seismicrna/mask/write.py index 59f294a9..d734f3dd 100644 --- a/src/seismicrna/mask/write.py +++ b/src/seismicrna/mask/write.py @@ -204,8 +204,8 @@ def _filter_discontig(self, batch: SectionMutsBatch): """ Filter out reads with discontiguous mates. """ if not self.mask_discontig: # Keep discontiguous reads. - logger.debug(f"{self} skipped filtering reads with " - f"discontiguous mates in {batch}") + logger.detail(f"{self} skipped filtering reads with " + f"discontiguous mates in {batch}") return batch # Find the reads with contiguous mates. reads = batch.read_nums[batch.contiguous]