test-src.yml

name: Test src/

on: [push]

jobs:
  build-linux:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 5

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python 3.10
      uses: actions/setup-python@v3
      with:
        python-version: '3.10'
    - name: Add conda to system path
      run: |
        # $CONDA is an environment variable pointing to the root of the miniconda directory
        echo $CONDA/bin >> $GITHUB_PATH
    - name: Set up Conda environment
      run: |
        # Update Conda so that it doesn't issue a reminder to update.
        conda update -n base conda
        # Create a new Conda environment.
        conda env create --file env.yml
        # Also install flake8 (for linting).
        conda install flake8
        # Install SEISMIC-RNA and its Python dependencies with pip.
        pip install .
    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        #flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        #flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test with unittest
      run: |
        # Print all tests in real time using double verbose mode.
        seismic +test -vv