From db1594845c80aaf08255db400c54ab1bd9a7b5de Mon Sep 17 00:00:00 2001 From: Rohit Goswami Date: Tue, 24 Oct 2023 00:56:57 +0000 Subject: [PATCH 1/2] BLD: Update pixi to fast_matrix_market 1.7.4 Pixi update --- pixi.lock | 5232 ++++++++++++++++++++++++++--------------------------- pixi.toml | 2 +- 2 files changed, 2534 insertions(+), 2700 deletions(-) diff --git a/pixi.lock b/pixi.lock index 158ef8b..ad59daa 100644 --- a/pixi.lock +++ b/pixi.lock @@ -14,117 +14,137 @@ metadata: inputs_metadata: null custom_metadata: null package: -- name: tbump - version: 6.9.0 +- platform: linux-64 + name: _libgcc_mutex + version: '0.1' + category: main manager: conda - platform: linux-64 - dependencies: - python: '>=3.6,<4.0' - schema: '>=0.7.1' - tomlkit: '>=0.5.8' - docopt: '>=0.6.2' - cli-ui: '>=0.10.3' - url: https://conda.anaconda.org/conda-forge/noarch/tbump-6.9.0-pyhd8ed1ab_0.tar.bz2 + dependencies: [] + url: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 hash: - 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license: Apache-2.0 - license_family: Apache - size: 281798 - timestamp: 1657977462600 + license: BSD-3-Clause + license_family: BSD + size: 545199 + timestamp: 1693151163452 version: 1 diff --git a/pixi.toml b/pixi.toml index 7c9615c..bc6dcab 100644 --- a/pixi.toml +++ b/pixi.toml @@ -13,7 +13,7 @@ r-renv = "1.0.2.*" compilers = "1.6.0.*" radian = "0.6.7.*" ipython = "8.14.0.*" -fast_matrix_market = "1.7.2.*" +fast_matrix_market = "1.7.4.*" numpy = "1.25.2.*" scipy = "1.11.2.*" towncrier = "23.6.0.*" From 89f01eca442c92fc99e978cd40277b4c8216084a Mon Sep 17 00:00:00 2001 From: Rohit Goswami Date: Tue, 24 Oct 2023 01:05:20 +0000 Subject: [PATCH 2/2] ENH: Update fast_matrix_market to 1.7.4 --- inst/include/fast_matrix_market/app/array.hpp | 6 +- .../fast_matrix_market/app/doublet.hpp | 4 +- .../fast_matrix_market/app/triplet.hpp | 85 ++++++++-- .../app/user_type_string.hpp | 86 ++++++++++ inst/include/fast_matrix_market/chunking.hpp | 2 +- .../fast_matrix_market/fast_matrix_market.hpp | 14 +- .../include/fast_matrix_market/field_conv.hpp | 154 ++++++++---------- inst/include/fast_matrix_market/header.hpp | 8 + .../fast_matrix_market/parse_handlers.hpp | 2 +- inst/include/fast_matrix_market/read_body.hpp | 31 +++- inst/include/fast_matrix_market/types.hpp | 25 +++ .../include/fast_matrix_market/write_body.hpp | 2 +- 12 files changed, 302 insertions(+), 117 deletions(-) create mode 100644 inst/include/fast_matrix_market/app/user_type_string.hpp diff --git a/inst/include/fast_matrix_market/app/array.hpp b/inst/include/fast_matrix_market/app/array.hpp index 3abcf6a..cb5045d 100644 --- a/inst/include/fast_matrix_market/app/array.hpp +++ b/inst/include/fast_matrix_market/app/array.hpp @@ -105,7 +105,9 @@ namespace fast_matrix_market { header.nnz = values.size(); header.object = matrix; - header.field = get_field_type((const VT*)nullptr); + if (options.fill_header_field_type) { + header.field = get_field_type((const VT *) nullptr); + } header.format = array; header.symmetry = general; @@ -121,4 +123,4 @@ namespace fast_matrix_market { #undef array_read_vector #undef array_write_vector #endif -} +} \ No newline at end of file diff --git a/inst/include/fast_matrix_market/app/doublet.hpp b/inst/include/fast_matrix_market/app/doublet.hpp index ba047da..88c11ae 100644 --- a/inst/include/fast_matrix_market/app/doublet.hpp +++ b/inst/include/fast_matrix_market/app/doublet.hpp @@ -89,7 +89,7 @@ namespace fast_matrix_market { header.object = vector; if (header.nnz > 0 && (values.cbegin() == values.cend())) { header.field = pattern; - } else if (header.field != pattern) { + } else if (header.field != pattern && options.fill_header_field_type) { header.field = get_field_type((const VT *) nullptr); } header.format = coordinate; @@ -109,4 +109,4 @@ namespace fast_matrix_market { #undef doublet_read_vector #undef doublet_write_vector #endif -} +} \ No newline at end of file diff --git a/inst/include/fast_matrix_market/app/triplet.hpp b/inst/include/fast_matrix_market/app/triplet.hpp index aee46ba..871305c 100644 --- a/inst/include/fast_matrix_market/app/triplet.hpp +++ b/inst/include/fast_matrix_market/app/triplet.hpp @@ -36,6 +36,75 @@ namespace fast_matrix_market { #define triplet_write_vector typename #endif + /** + * Generalize symmetry of triplet. + * + * Does not duplicate diagonal elements. + */ + template + void generalize_symmetry_triplet(IVEC& rows, IVEC& cols, VVEC& values, const symmetry_type& symmetry) { + if (symmetry == general) { + return; + } + + std::size_t num_diagonal_elements = 0; + + // count how many diagonal elements there are (these do not get duplicated) + for (std::size_t i = 0; i < rows.size(); ++i) { + if (rows[i] == cols[i]) { + ++num_diagonal_elements; + } + } + + // resize vectors + auto orig_size = rows.size(); + auto new_size = 2*orig_size - num_diagonal_elements; + rows.resize(new_size); + cols.resize(new_size); + values.resize(new_size); + + // fill in the new values + auto row_iter = rows.begin() + orig_size; + auto col_iter = cols.begin() + orig_size; + auto val_iter = values.begin() + orig_size; + for (std::size_t i = 0; i < orig_size; ++i) { + if (rows[i] == cols[i]) { + continue; + } + + *row_iter = cols[i]; + *col_iter = rows[i]; + *val_iter = get_symmetric_value(values[i], symmetry); + + ++row_iter; ++col_iter; ++val_iter; + } + } + + template + void read_matrix_market_body_triplet(std::istream &instream, + const matrix_market_header& header, + IVEC& rows, IVEC& cols, VVEC& values, + T pattern_value, + read_options options = {}) { + bool app_generalize = false; + if (options.generalize_symmetry && options.generalize_symmetry_app) { + app_generalize = true; + options.generalize_symmetry = false; + } + + auto nnz = get_storage_nnz(header, options); + rows.resize(nnz); + cols.resize(nnz); + values.resize(nnz); + + auto handler = triplet_parse_handler(rows.begin(), cols.begin(), values.begin()); + read_matrix_market_body(instream, header, handler, pattern_value, options); + + if (app_generalize) { + generalize_symmetry_triplet(rows, cols, values, header.symmetry); + } + } + /** * Read a Matrix Market file into a triplet (i.e. row, column, value vectors). */ @@ -44,16 +113,10 @@ namespace fast_matrix_market { matrix_market_header& header, IVEC& rows, IVEC& cols, VVEC& values, const read_options& options = {}) { - using VT = typename std::iterator_traits::value_type; - read_header(instream, header); - rows.resize(get_storage_nnz(header, options)); - cols.resize(get_storage_nnz(header, options)); - values.resize(get_storage_nnz(header, options)); - - auto handler = triplet_parse_handler(rows.begin(), cols.begin(), values.begin()); - read_matrix_market_body(instream, header, handler, pattern_default_value((const VT*)nullptr), options); + using VT = typename std::iterator_traits::value_type; + read_matrix_market_body_triplet(instream, header, rows, cols, values, pattern_default_value((const VT*)nullptr), options); } /** @@ -88,7 +151,7 @@ namespace fast_matrix_market { header.object = matrix; if (header.nnz > 0 && (values.cbegin() == values.cend())) { header.field = pattern; - } else if (header.field != pattern) { + } else if (header.field != pattern && options.fill_header_field_type) { header.field = get_field_type((const VT *) nullptr); } header.format = coordinate; @@ -122,7 +185,7 @@ namespace fast_matrix_market { header.object = matrix; if (header.nnz > 0 && (values.cbegin() == values.cend())) { header.field = pattern; - } else if (header.field != pattern) { + } else if (header.field != pattern && options.fill_header_field_type) { header.field = get_field_type((const VT *) nullptr); } header.format = coordinate; @@ -143,4 +206,4 @@ namespace fast_matrix_market { #undef triplet_read_vector #undef triplet_write_vector #endif -} +} \ No newline at end of file diff --git a/inst/include/fast_matrix_market/app/user_type_string.hpp b/inst/include/fast_matrix_market/app/user_type_string.hpp new file mode 100644 index 0000000..f396577 --- /dev/null +++ b/inst/include/fast_matrix_market/app/user_type_string.hpp @@ -0,0 +1,86 @@ +// Copyright (C) 2022-2023 Adam Lugowski. All rights reserved. +// Use of this source code is governed by the BSD 2-clause license found in the LICENSE.txt file. +// SPDX-License-Identifier: BSD-2-Clause + +/* + * Support std::string as a value type. + * + * Supports such things as a triplet where the value type is std::vector, and such structure can read + * any Matrix Market file regardless of field type. + * + * IMPORTANT! + * + * If using this as a template for your own user type, note the weird #include ordering requirements! + * + * ``` + * #include + * + * namespace fast_matrix_market { + * // declare your type stuff here + * } + * + * // Now include the main header. + * #include + * ``` + */ + +namespace fast_matrix_market { + /** + * (Needed for read) Parse a value. + * + * This method must find the end of the value, too. Likely the next newline or end of string is the end. + * + * @param pos starting character + * @param end end of string. Do not dereference >end. + * @param out out parameter of parsed value + * @return a pointer to the next character following the value. Likely the newline. + */ + inline const char *read_value(const char *pos, const char *end, std::string &out, [[maybe_unused]] const read_options& options = {}) { + const char *field_start = pos; + // find the end of the line + while (pos != end && *pos != '\n') { + ++pos; + } + out = std::string(field_start, (pos - field_start)); + + return pos; + } + + /** + * (Optional, used for read) Declare that read_value(std::string) declared above can read complex values too. + */ + template<> struct can_read_complex : std::true_type {}; + + /** + * (Needed for read) Used to handle skew-symmetric files. Must be defined regardless. + */ + inline std::string negate(const std::string& o) { + return "-" + o; + } + + /** + * (Needed for read) Default value to set for patterns (if option selected). Must be defined regardless. + */ + inline std::string pattern_default_value([[maybe_unused]] const std::string* type) { + return ""; + } + + // If using default dense array loader, type must also work with std::plus<>. + + /** + * (Needed for write) Used to determine what field type to set in the MatrixMarket header. + * + * IMPORTANT! This is the default type. If it does not match your actual data, set the appropriate type + * in the header, then use write_options::fill_header_field_type = false. + */ + inline field_type get_field_type([[maybe_unused]] const std::string* type) { + return real; + } + + /** + * (Needed for write) Write a value. + */ + inline std::string value_to_string(const std::string& value, [[maybe_unused]] int precision) { + return value; + } +} diff --git a/inst/include/fast_matrix_market/chunking.hpp b/inst/include/fast_matrix_market/chunking.hpp index e2d5259..a7395b5 100644 --- a/inst/include/fast_matrix_market/chunking.hpp +++ b/inst/include/fast_matrix_market/chunking.hpp @@ -57,7 +57,7 @@ namespace fast_matrix_market { template bool is_all_spaces(ITER begin, ITER end) { - return std::all_of(begin, end, [](char c) { return c == ' ' || c == '\t'; }); + return std::all_of(begin, end, [](char c) { return c == ' ' || c == '\t' || c == '\r'; }); } /** diff --git a/inst/include/fast_matrix_market/fast_matrix_market.hpp b/inst/include/fast_matrix_market/fast_matrix_market.hpp index ff7b863..0b2a3f9 100644 --- a/inst/include/fast_matrix_market/fast_matrix_market.hpp +++ b/inst/include/fast_matrix_market/fast_matrix_market.hpp @@ -8,30 +8,30 @@ #pragma once #include -#include #include #include #include #include #include #include +#include #include "types.hpp" +// Support std::string as a user type +#include "app/user_type_string.hpp" + namespace fast_matrix_market { // Version macros. // Keep in sync with python/pyproject.toml #define FAST_MATRIX_MARKET_VERSION_MAJOR 1 #define FAST_MATRIX_MARKET_VERSION_MINOR 7 -#define FAST_MATRIX_MARKET_VERSION_PATCH 2 +#define FAST_MATRIX_MARKET_VERSION_PATCH 4 constexpr std::string_view kSpace = " "; constexpr std::string_view kNewline = "\n"; - template struct is_complex : std::false_type {}; - template struct is_complex> : std::true_type {}; - /** * */ @@ -120,6 +120,10 @@ namespace fast_matrix_market { return !o; } + inline bool negate(const std::vector::reference o) { + return !o; + } + template T negate(const T& o) { return std::negate()(o); diff --git a/inst/include/fast_matrix_market/field_conv.hpp b/inst/include/fast_matrix_market/field_conv.hpp index 3d3bcdf..a46e545 100644 --- a/inst/include/fast_matrix_market/field_conv.hpp +++ b/inst/include/fast_matrix_market/field_conv.hpp @@ -6,6 +6,7 @@ #include #include +#include #include #include #include @@ -31,7 +32,7 @@ namespace fast_matrix_market { /////////////////////////////////////////// inline const char* skip_spaces(const char* pos) { - return pos + std::strspn(pos, " \t"); + return pos + std::strspn(pos, " \t\r"); } inline const char* skip_spaces_and_newlines(const char* pos, int64_t& line_num) { @@ -179,7 +180,7 @@ namespace fast_matrix_market { throw out_of_range("Floating-point overflow"); } else { // std::from_chars does not return a best match on under/overflow, so fall back to strtod - out = std::strtod(pos, nullptr); + out = static_cast(std::strtod(pos, nullptr)); } } else { throw invalid_mm("Invalid floating-point value."); @@ -231,13 +232,22 @@ namespace fast_matrix_market { template const char* read_float(const char* pos, const char* end, FT& out, out_of_range_behavior oorb) { + constexpr bool have_fast_float = #ifdef FMM_USE_FAST_FLOAT - return read_float_fast_float(pos, end, out, oorb); -#elif defined(FMM_FROM_CHARS_DOUBLE_SUPPORTED) - return read_float_from_chars(pos, end, out, oorb); + true; #else - return read_float_fallback(pos, end, out, oorb); + false; +#endif + + if constexpr (have_fast_float && (std::is_same_v || std::is_same_v)) { + return read_float_fast_float(pos, end, out, oorb); + } else { +#if defined(FMM_FROM_CHARS_DOUBLE_SUPPORTED) + return read_float_from_chars(pos, end, out, oorb); +#else + return read_float_fallback(pos, end, out, oorb); #endif + } } #ifdef FMM_FROM_CHARS_LONG_DOUBLE_SUPPORTED @@ -315,15 +325,8 @@ namespace fast_matrix_market { return ret; } - inline const char* read_value(const char* pos, const char* end, float& out, const read_options& options = {}) { - return read_float(pos, end, out, options.float_out_of_range_behavior); - } - - inline const char* read_value(const char* pos, const char* end, double& out, const read_options& options = {}) { - return read_float(pos, end, out, options.float_out_of_range_behavior); - } - - inline const char* read_value(const char* pos, const char* end, long double& out, const read_options& options = {}) { + template , int>::type = 0> + const char* read_value(const char* pos, const char* end, T& out, const read_options& options = {}) { return read_float(pos, end, out, options.float_out_of_range_behavior); } @@ -389,11 +392,8 @@ namespace fast_matrix_market { return value ? "1" : "0"; } - inline std::string value_to_string(const int32_t & value, [[maybe_unused]] int precision) { - return int_to_string(value); - } - - inline std::string value_to_string(const int64_t & value, [[maybe_unused]] int precision) { + template , int>::type = 0> + std::string value_to_string(const T& value, [[maybe_unused]] int precision) { return int_to_string(value); } @@ -404,7 +404,17 @@ namespace fast_matrix_market { std::string value_to_string_fallback(const T& value, int precision) { if (precision < 0) { // shortest representation - return std::to_string(value); + if constexpr (std::is_floating_point_v + && !std::is_same_v + && !std::is_same_v + && !std::is_same_v) { + // std::to_string is faster but does not support fixed-width floating point types. + std::ostringstream oss; + oss << value; + return oss.str(); + } else { + return std::to_string(value); + } } else { std::ostringstream oss; oss << std::setprecision(precision) << value; @@ -523,8 +533,9 @@ namespace fast_matrix_market { #endif #ifdef FMM_TO_CHARS_DOUBLE_SUPPORTED - inline std::string value_to_string_to_chars(const float& value, int precision) { - std::string ret(16, ' '); + template ::value, int>::type = 0> + inline std::string value_to_string_to_chars(const T& value, int precision) { + std::string ret(100, ' '); std::to_chars_result result{}; if (precision < 0) { // shortest representation @@ -541,23 +552,6 @@ namespace fast_matrix_market { } } - inline std::string value_to_string_to_chars(const double& value, int precision) { - std::string ret(25, ' '); - std::to_chars_result result{}; - if (precision < 0) { - // shortest representation - result = std::to_chars(ret.data(), ret.data() + ret.size(), value); - } else { - // explicit precision - result = std::to_chars(ret.data(), ret.data() + ret.size(), value, std::chars_format::general, precision); - } - if (result.ec == std::errc()) { - ret.resize(result.ptr - ret.data()); - return ret; - } else { - return value_to_string_fallback(value, precision); - } - } #endif #ifdef FMM_TO_CHARS_LONG_DOUBLE_SUPPORTED @@ -581,81 +575,67 @@ namespace fast_matrix_market { #endif /** - * float to string. + * long double to string. * - * Preference order: Dragonbox (no precision support), to_chars, Ryu, fallback. + * Preference order: to_chars, fallback. + * Note: Ryu's generic_128 can do this on some platforms, but it is not reliable. + * see https://github.com/ulfjack/ryu/issues/215 */ - inline std::string value_to_string(const float& value, int precision) { -#ifdef FMM_USE_DRAGONBOX - if (precision < 0) { - // Shortest representation. Dragonbox is fastest. - return value_to_string_dragonbox(value); - } -#endif - -#if defined(FMM_TO_CHARS_DOUBLE_SUPPORTED) + inline std::string value_to_string(const long double& value, int precision) { +#if defined(FMM_TO_CHARS_LONG_DOUBLE_SUPPORTED) return value_to_string_to_chars(value, precision); -#elif defined(FMM_USE_RYU) - return value_to_string_ryu(value, precision); #else return value_to_string_fallback(value, precision); #endif } + /** - * double to string. + * floating-point to string. + * + * Preference order: Dragonbox (fast but no precision support), to_chars, Ryu, fallback. * - * Preference order: Dragonbox (no precision support), to_chars, Ryu, fallback. + * Dragonbox and Ryu only support float and double types. */ - inline std::string value_to_string(const double& value, int precision) { + template && !std::is_same_v, int>::type = 0> + std::string value_to_string(const T& value, int precision) { #ifdef FMM_USE_DRAGONBOX - if (precision < 0) { - // Shortest representation. Dragonbox is fastest. - return value_to_string_dragonbox(value); + if constexpr (std::is_same_v || std::is_same_v) { + if (precision < 0) { + // Shortest representation. Dragonbox is fastest. + return value_to_string_dragonbox(value); + } } #endif -#if defined(FMM_TO_CHARS_DOUBLE_SUPPORTED) +#ifdef FMM_TO_CHARS_DOUBLE_SUPPORTED return value_to_string_to_chars(value, precision); -#elif defined(FMM_USE_RYU) - return value_to_string_ryu(value, precision); #else - return value_to_string_fallback(value, precision); -#endif - } - - /** - * long double to string. - * - * Preference order: to_chars, fallback. - * Note: Ryu's generic_128 can do this on some platforms, but it is not reliable. - * see https://github.com/ulfjack/ryu/issues/215 - */ - inline std::string value_to_string(const long double& value, int precision) { -#if defined(FMM_TO_CHARS_LONG_DOUBLE_SUPPORTED) - return value_to_string_to_chars(value, precision); + constexpr bool have_ryu = +#ifdef FMM_USE_RYU + true; #else - return value_to_string_fallback(value, precision); + false; #endif - } - inline std::string value_to_string(const std::complex& value, int precision) { - return value_to_string(value.real(), precision) + " " + value_to_string(value.imag(), precision); - } - - inline std::string value_to_string(const std::complex& value, int precision) { - return value_to_string(value.real(), precision) + " " + value_to_string(value.imag(), precision); + if constexpr (have_ryu && (std::is_same_v || std::is_same_v)) { + return value_to_string_ryu(value, precision); + } else { + return value_to_string_fallback(value, precision); + } +#endif } - inline std::string value_to_string(const std::complex& value, int precision) { + template ::value, int>::type = 0> + inline std::string value_to_string(const COMPLEX& value, int precision) { return value_to_string(value.real(), precision) + " " + value_to_string(value.imag(), precision); } /** * Catchall */ - template + template && !std::is_floating_point_v && !is_complex::value, int>::type = 0> std::string value_to_string(const T& value, int precision) { return value_to_string_fallback(value, precision); } -} +} \ No newline at end of file diff --git a/inst/include/fast_matrix_market/header.hpp b/inst/include/fast_matrix_market/header.hpp index d415cb4..30436e9 100644 --- a/inst/include/fast_matrix_market/header.hpp +++ b/inst/include/fast_matrix_market/header.hpp @@ -57,6 +57,12 @@ namespace fast_matrix_market { return is_all_spaces(std::cbegin(line), end); } + inline void strip_trailing_cr(std::string &line) { + if (!line.empty() && line[line.size() - 1] == '\r') { + line.resize(line.size() - 1); + } + } + /** * Calculate how many nonzero elements will need to be stored. * For general matrices this will be the same as header.nnz, but if the MatrixMarket file has symmetry and @@ -163,6 +169,7 @@ namespace fast_matrix_market { // read banner std::getline(instream, line); + strip_trailing_cr(line); lines_read++; if (line.find("MatrixMarket", 0) == std::string::npos) { @@ -189,6 +196,7 @@ namespace fast_matrix_market { // Read any comments do { std::getline(instream, line); + strip_trailing_cr(line); lines_read++; if (!instream) { diff --git a/inst/include/fast_matrix_market/parse_handlers.hpp b/inst/include/fast_matrix_market/parse_handlers.hpp index 1c8fbb7..239d625 100644 --- a/inst/include/fast_matrix_market/parse_handlers.hpp +++ b/inst/include/fast_matrix_market/parse_handlers.hpp @@ -274,4 +274,4 @@ namespace fast_matrix_market { int64_t nrows; int64_t ncols; }; -} +} \ No newline at end of file diff --git a/inst/include/fast_matrix_market/read_body.hpp b/inst/include/fast_matrix_market/read_body.hpp index c5fd66c..8b129ee 100644 --- a/inst/include/fast_matrix_market/read_body.hpp +++ b/inst/include/fast_matrix_market/read_body.hpp @@ -104,6 +104,25 @@ namespace fast_matrix_market { // Chunks /////////////////////////////////////////////////////////////////// + template + RET get_symmetric_value(const T& v, const symmetry_type& symmetry) { + switch (symmetry) { + case symmetric: + return v; + case skew_symmetric: + if constexpr (std::is_unsigned_v) { + throw invalid_argument("Cannot load skew-symmetric matrix into unsigned value type."); + } else { + return negate(v); + } + case hermitian: + return complex_conjugate(v); + case general: + return v; + } + return v; + } + template void generalize_symmetry_coordinate(HANDLER& handler, const matrix_market_header &header, @@ -445,11 +464,9 @@ namespace fast_matrix_market { } #endif - // Verify generalize symmetry is compatible with this file. - if (header.symmetry != general && options.generalize_symmetry) { - if (header.object != matrix) { - throw invalid_mm("Invalid Symmetry: vectors cannot have symmetry. Set generalize_symmetry=false to disregard this symmetry."); - } + // Sanity check input + if (header.object == vector && header.symmetry != general) { + throw invalid_mm("Vectors cannot have symmetry."); } if (header.format == array && header.field == pattern) { @@ -546,7 +563,7 @@ namespace fast_matrix_market { HANDLER& handler, typename HANDLER::value_type pattern_value, const read_options& options = {}) { - if (header.field == complex && !is_complex::value) { + if (header.field == complex && !can_read_complex::value) { // the file is complex but the values are not throw complex_incompatible("Matrix Market file has complex fields but passed data structure cannot handle complex values."); } @@ -554,4 +571,4 @@ namespace fast_matrix_market { auto fwd_handler = pattern_parse_adapter(handler, pattern_value); read_matrix_market_body_no_adapters(instream, header, fwd_handler, options); } -} +} \ No newline at end of file diff --git a/inst/include/fast_matrix_market/types.hpp b/inst/include/fast_matrix_market/types.hpp index 0b5240a..aaea3c2 100644 --- a/inst/include/fast_matrix_market/types.hpp +++ b/inst/include/fast_matrix_market/types.hpp @@ -4,6 +4,7 @@ #pragma once +#include #include #include @@ -87,6 +88,13 @@ namespace fast_matrix_market { */ bool generalize_symmetry = true; + /** + * If true, perform symmetry generalization in the application binding as a post-processing step. + * If supported by the binding this method can avoid extra diagonal elements. + * If false or unsupported, diagonals are handled according to `generalize_coordinate_diagnonal_values`. + */ + bool generalize_symmetry_app = true; + /** * Generalize Symmetry: * How to handle a value on the diagonal of a symmetric coordinate matrix. @@ -143,5 +151,22 @@ namespace fast_matrix_market { * Whether to always write a comment line even if comment is empty. */ bool always_comment = false; + + /** + * Whether to determine header field type based on the supplied datastructure. + * + * If true then set header.field using `get_field_type()`. The only exception is + * if field == pattern then it is left unchanged. + * + * Possible reasons to set to false: + * - Using a custom type, such as std::string, where `get_field_type()` would return the wrong type + * - Writing integer structures as real + */ + bool fill_header_field_type = true; }; + + template struct is_complex : std::false_type {}; + template struct is_complex> : std::true_type {}; + + template struct can_read_complex : is_complex {}; } diff --git a/inst/include/fast_matrix_market/write_body.hpp b/inst/include/fast_matrix_market/write_body.hpp index 963eca2..21118c6 100644 --- a/inst/include/fast_matrix_market/write_body.hpp +++ b/inst/include/fast_matrix_market/write_body.hpp @@ -71,4 +71,4 @@ namespace fast_matrix_market { } write_body_sequential(os, formatter, options); } -} +} \ No newline at end of file