From 6e2c0183c524a1e7e6b1501843a95d53ff685549 Mon Sep 17 00:00:00 2001
From: "Huska, Matthew" <HuskaM@rki.de>
Date: Wed, 22 May 2024 11:35:37 +0200
Subject: [PATCH] Bump action versions for node 16 -> 20 change, tweak conda
 clean command based on forums, bump singularity action. Closes #91

---
 .github/workflows/dryrun.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/dryrun.yml b/.github/workflows/dryrun.yml
index 681521f..53c7279 100644
--- a/.github/workflows/dryrun.yml
+++ b/.github/workflows/dryrun.yml
@@ -30,9 +30,9 @@ jobs:
           - "3.9"
     steps:
       - name: Check out pipeline code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
-      - uses: actions/cache@v3
+      - uses: actions/cache@v4
         with:
           path: /usr/local/bin/nextflow
           key: ${{ runner.os }}
@@ -40,7 +40,7 @@ jobs:
             ${{ runner.os }}-nextflow-
 
       - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
         with:
           version: "${{ matrix.NXF_VER }}"
 
@@ -51,7 +51,7 @@ jobs:
 
       - name: Set up Singularity
         if: matrix.profile == 'singularity'
-        uses: eWaterCycle/setup-singularity@v5
+        uses: eWaterCycle/setup-singularity@v7
         with:
           singularity-version: 3.7.1
 
@@ -66,7 +66,7 @@ jobs:
 
       - name: Conda clean
         if: matrix.profile == 'conda'
-        run: conda clean -a
+        run: conda clean --all -y -f
 
       - name: Run nf-test
         run: nf-test test --profile=${{ matrix.profile }} tests/${{ matrix.inputtype }}/*.nf.test --tap=test.tap