Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update Makefile to streamline bioconda build #15

Open
Krannich479 opened this issue Oct 5, 2023 · 0 comments
Open

Update Makefile to streamline bioconda build #15

Krannich479 opened this issue Oct 5, 2023 · 0 comments
Assignees
@Krannich479
Labels
enhancement New feature or request

Comments

@Krannich479
Copy link
Collaborator

Problem:

The current bioconda recipe of amplisim pulls the tarball of the latest release. The tarball does not include submodules, therefore I implemented a rather cruel fix in the build.sh to clone and reset dependencies. See these lines of code.

Ideal solution:

Upgrade the Makefile in a way s.t. the system wide htslib is used if there is not recursive clone of the submodules.
@Krannich479 Krannich479 added the enhancement New feature or request label Oct 5, 2023
@Krannich479 Krannich479 self-assigned this Oct 5, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@Krannich479 Krannich479

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@Krannich479