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KeyError for SINGLEM_METAPACKAGE_PATH #236

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AroneyS opened this issue Nov 29, 2024 · 0 comments · May be fixed by #239
Open

KeyError for SINGLEM_METAPACKAGE_PATH #236

AroneyS opened this issue Nov 29, 2024 · 0 comments · May be fixed by #239

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@AroneyS
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AroneyS commented Nov 29, 2024

Getting a keyerror for SINGLEM_METAPACKAGE_PATH in aviary/modules/binning/binning.smk", line 736, in <module> for some reason with dastool jobs submitted to queue. Not sure why since all the relevant conda environments have that env variable set. And that code hasn't changed for a while... For reference, this is rerunning Aviary v0.10.0 on runs from v0.9.2 that completed successfully, but removing dastool outputs so that it can include vamb bins.

Shouldn't

aviary/aviary/modules/binning/binning.smk

Line 736 in 28c63a3

package_path = os.environ["SINGLEM_METAPACKAGE_PATH"]
be using config['singlem_metapackage'] anyway?
@AroneyS AroneyS linked a pull request Dec 8, 2024 that will close this issue
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Use config as env source rhysnewell/aviary
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@AroneyS