From e967fba1134fbf429a4de0564d387efc25ad5b7c Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Sat, 2 Nov 2024 17:40:23 +1000 Subject: [PATCH] aviary: Update --build help message. --- aviary/aviary.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/aviary/aviary.py b/aviary/aviary.py index 54d6d966..8ab7c8ce 100755 --- a/aviary/aviary.py +++ b/aviary/aviary.py @@ -260,11 +260,13 @@ def main(): base_group.add_argument( '--build', - help='Build conda environments and then exits. Equivalent to \"--snakemake-cmds \'--conda-create-envs-only True \' \"', + help='Build conda environments necessary to run the pipeline, and then exit. Equivalent to "--snakemake-cmds \'--conda-create-envs-only True \' ". Other inputs should be specified as if running normally so that the right set of conda environments is built.', type=str2bool, nargs='?', const=True, dest='build', + metavar='yes|no', + default='no', ) base_group.add_argument(