From 7da6ec1dfc33c77dfa2e7c7bbe0607983fd8e5a9 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Fri, 1 Nov 2024 15:19:56 +1000 Subject: [PATCH] config.yaml: Remove this extraneous file. --- .gitignore | 1 + config.yaml | 53 ----------------------------------------------------- 2 files changed, 1 insertion(+), 53 deletions(-) delete mode 100644 config.yaml diff --git a/.gitignore b/.gitignore index da6698c7..d63c82a3 100644 --- a/.gitignore +++ b/.gitignore @@ -10,3 +10,4 @@ aviary_genome.egg-info example/ test/data/.conda +config.yaml diff --git a/config.yaml b/config.yaml deleted file mode 100644 index f8b5a9db..00000000 --- a/config.yaml +++ /dev/null @@ -1,53 +0,0 @@ -%YAML 1.1 ---- -fasta: none -long_reads: none -long_read_type: ont -short_reads_1: none -short_reads_2: none -min_contig_size: 1500 -min_bin_size: 200000 -max_threads: 8 -pplacer_threads: 8 -max_memory: 250 -genome_size: 5000000 -reference_filter: none -strain_analysis: false -unassembled_long: none -mags: none -mag_directory: none -mag_extension: none -instrain_params: {} -profile_read_list: none -min_long_read_length: 500 -keep_percent: 99 -min_mean_q: 40 -guppy_model: r941_min_high_g360 -gtdbtk_folder: /bio_data/gtdbtk/release202/ -busco_folder: none -checkm2_db_folder: ~/databases/CheckM2_database/ -eggnog_folder: /bio_data/emapper/ -virsorter_data: none -email: somename@email.co -gsa: -- /home/rhys_newell_microba_com/git/aviary/none -gsa_mappings: none -semibin_model: global -kmer_sizes: -- auto -use_megahit: false -coassemble: true -min_cov_long: 20 -min_cov_short: 3 -exclude_contig_cov: 100 -exclude_contig_size: 25000 -long_contig_size: 100000 -use_checkm2_scores: false -previous_runs: none -min_completeness: none -max_contamination: none -ani: none -precluster_ani: none -precluster_method: none -pggb_params: none -tmpdir: none