From 6d0758362a5d64cc947c0f64458533a747de1d5d Mon Sep 17 00:00:00 2001 From: rhysnewell Date: Thu, 7 Sep 2023 23:42:59 +0000 Subject: [PATCH] amke long_read.fastq.gz a tempfile --- aviary/modules/quality_control/qc.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/aviary/modules/quality_control/qc.smk b/aviary/modules/quality_control/qc.smk index 5977e457..df267781 100755 --- a/aviary/modules/quality_control/qc.smk +++ b/aviary/modules/quality_control/qc.smk @@ -15,7 +15,7 @@ rule link_reads: params: coassemble = config["coassemble"] output: - "data/long_reads.fastq.gz" + temp("data/long_reads.fastq.gz") threads: config['max_threads'] run: @@ -37,7 +37,7 @@ rule filtlong_no_reference: input: long = config['long_reads'] output: - long = "data/long_reads.fastq.gz", + long = temp("data/long_reads.fastq.gz"), params: min_length = config['min_long_read_length'], keep_percent = config['keep_percent'],