- It is now possible to use multiple environment variable files using the
--env-file
flag, files can be specified as a comma-separated list or by using the flag multiple times. Variables defined in later files take precedence. singularity.conf
now accepts setting new options regarding namespaces:allow ipc ns
: disable the use of the--ipc
flag.allow uts ns
: invalidate the use of the--uts
and--hostname
flags.
- A new
singularity data package
command allows files and directories to be packaged into an OCI-SIF data container. - A new
--layer-format
flag forsingularity push
allows layers in an OCI-SIF image to be pushed tolibrary://
anddocker://
registries insquashfs
(default) ortar
format. Images pushed with--layer-format tar
can be pulled and run by other OCI runtimes.
- Avoid unnecessary copying / extraction of OCI images and Docker tarballs into a layout directory when they are directly accessible as a local file / directory.
- Avoid unnecessary intermediate temporary image layout when building from Dockerfile to OCI-SIF.
%files from
in a definition file will now correctly copy symlinks that point to a target above the destination directory, but inside the destination stage rootfs.- Use ABI 3 for Apparmor profile on Ubuntu <23.10.
- Requires a minimum of Go 1.21 to build. Go 1.20 is end-of-life.
- Set default
PATH
in container run in OCI-Mode when image does not setPATH
. - Fix storage of credentials for
docker.io
to behave the same as forindex.docker.io
. - Improve documentation for
remote list
command. - Don't fail with lack of descriptor capacity when writing OCI images with many layers to OCI-SIF.
- Ensure a fixed number of spare descriptors is present in the OCI-SIF when pulling an OCI image.
- Set OCI runtime-spec annotations that are required by the documented image-spec conversion process.
- In
--oci
mode always set inner ID map based on host user, notUSER
in OCI container. Fixes incorrect permissions for files owned byUSER
in the container. - Provide warning / info message for OCI image-spec features (volumes, exposed ports) that are not supported by singularity.
- Honor
WORKDIR
by default for OCI images in--oci
mode, as required by OCI image-spec. - Restore previous
--writable
behaviour when running a container image from SIF/SquashFS in user namepace mode. The image will be extracted to a temporary sandbox, which is writable at runtime. Note that any changes are not made to the original image. - Fix
target: no such file or directory
error in native mode when extracting layers from certain OCI images that manipulate hard links across layers. - Fix extraction of OCI layers when run in a root mapped user namespace
(e.g..
unshare -r
). - Use user namespace for wrapping of
unsquashfs
when singularity is run with--userns / -u
flag. Fixes temporary sandbox extraction of images in non-root mapped user namespace (e.g.unshare -c
).
- Update
github.com/moby/buildkit
dependency, used for--oci
Dockerfile builds, addressing the following upstream CVEs:- CVE-2024-23650 Possible panic when incorrect parameters sent from frontend
- CVE-2024-23651 Possible race condition with accessing subpaths from cache mounts.
- CVE-2024-23652 Possible host system access from mount stub cleaner.
- CVE-2024-23653 Interactive containers API does not validate entitlements check.
Note also that in OCI-Mode, SingularityCE may call out to runc
versions
vulnerable to
CVE-2024-21626.
runc
is not bundled with SingularityCE, and should be updated via your Linux
distribution's package manager, or manually.
- Workaround segfault in
crun
v1.11+ when no resource limits are specified. containers/crun#1402
-
--oci
mode containers and native mode instances can now be successfully started as a non-root user on cgroups v2 systems when both:- The system configuration / environment does not provide the correct information necessary to communicate with systemd via dbus.
- Resource limits (e.g.
--cpus
) have not been requested.
The container / instance will be started in the current cgroup, and information about the configuration issue displayed to the user as warnings.
-
In native mode, SIF/SquashFS container images will now be mounted with squashfuse when kernel mounts are disabled in
singularity.conf
, or cannot be used (non-setuid / user namespace workflow). If the FUSE mount fails, Singularity will fall back to extracting the container to a temporary sandbox in order to run it. -
In native mode, bare extfs container images will now be mounted with fuse2fs when kernel mounts are disabled in
singularity.conf
, or cannot be used (non-setuid / user namespace workflow).
- The
registry login
andregistry logout
commands now support a--authfile <path>
flag, which causes the OCI credentials to be written to / removed from a custom file located at<path>
instead of the default location ($HOME/.singularity/docker-config.json
). The commandspull
,push
,run
,exec
,shell
, andinstance start
can now also be passed a--authfile <path>
option, to read OCI registry credentials from this custom file. - A new
--keep-layers
flag, for thepull
andrun/shell/exec/instance start
commands, allows individual layers to be preserved when an OCI-SIF image is created from an OCI source. Multi layer OCI-SIF images can be run with SingularityCE 4.1 and later. - Singularity will now build OCI-SIF images from Dockerfiles, if the
--oci
flag is used with thebuild
command. Provide a Dockerfile as the final argument tobuild
, instead of a Singularity definition (.def) file. Supports--build-arg
/--build-arg-file
options,--arch
for cross-architecture builds,--authfile
and other authentication options, and more. See the user guide for more information. - Docker-style SCIF containers
(https://sci-f.github.io/tutorial-preview-install)
are now supported. If the entrypoint of an OCI container is the
scif
executable, then therun
/exec
/shell
commands in--oci
mode can be given the--app <appname>
flag, and will automatically invoke the relevant SCIF command. - A new
--tmp-sandbox
flag has been added to therun / shell / exec / instance start
commands. This will force Singularity to extract a container to a temporary sandbox before running it, when it would otherwise perform a kernel or FUSE mount.
- Added missing
tmp sandbox
directive tosingularity.conf
template.
- The experimental
--sif-fuse
flag, andsif fuse
directive insingularity.conf
are deprecated. The flag and directive were used to enable experimental mounting of SIF/SquashFS container images with FUSE in prior versions of Singularity. From 4.1, FUSE mounts are used automatically when kernel mounts are disabled / not available.
- Use kernel overlayfs instead of
fuse-overlayfs
when running as root user, regardless of unprivileged kernel overlay support. - Execute correct
%appstart
script when usinginstance start
with--app
.
- Added
libnvidia-nvvm
tonvliblist.conf
. Newer NVIDIA Drivers (known with= 525.85.05) require this lib to compile OpenCL programs against NVIDIA GPUs, i.e.
libnvidia-opencl
depends onlibnvidia-nvvm
.
- Support parentheses in
test
/[
commands in container startup scripts, via dependency update of mvdan.cc/sh. - Fix incorrect client timeout during remote build context upload.
- When user requests a bind of
/dev:/dev
or/dev/xxx:/dev/xxx
in OCI-mode, ensure that it is bind mounted with appropriate flags so that it is usable in the container.
- Added the upcoming NVIDIA driver library
libnvidia-gpucomp.so
to the list of libraries to add to NVIDIA GPU-enabled containers.
- Don't bind
/var/tmp
on top of/tmp
in the container, where/var/tmp
resolves to same location as/tmp
. - Fix problem where credentials locally stored with
registry login
command were not usable in some execution flows. Runregistry login
again with latest version to ensure credentials are stored correctly. - Don't fail in a yum bootstrap on systems where the _db_backend rpm macros is not defined (EL <8).
Singularity 4 introduces OCI-mode as a fully supported feature. It is enabled by
using the --oci
flag with the run / shell / exec / pull
commands, or by
setting oci mode = yes
in singularity.conf
.
In OCI-mode:
- Container images from OCI sources will be
pull
-ed to an OCI-SIF file. An OCI-SIF file encapsulates the OCI image configuration and squashed filesystem using an OCI, rather than Singularity specific, structure. - The
run / shell / exec
commands use a low-level OCI runtime (crun/runc) for container execution. - Default operation is compatible with other OCI tools, similar to using
--compat
in Singularity's non-OCI native mode. - OCI-modes support running existing Singularity non-OCI-SIF images, and can be
made to imitate native mode default behavior by using the
--no-compat
flag.
OCI-mode changes from 3.11 to 4.0 include:
run / shell / exec
in OCI-mode now includes support for the following existing CLI flags:--add-caps
--drop-caps
--keep-privs
--no-privs
--overlay
from directories, bare squashfs and extfs images.--workdir
--scratch
--no-home
--no-mount
(dev cannot be disabled in OCI mode)--no-umask
(with--no-compat
)--writable-tmpfs
(with--no-compat
)
- Added
--device
flag to "action" commands (run
/exec
/shell
) when run in OCI mode (--oci
). Currently supports passing one or more (comma-separated) fully-qualified CDI device names, and those devices will then be made available inside the container. - Added
--cdi-dirs
flag to override the default search locations for CDI json files, allowing, for example, users who don't have root access on their host machine to nevertheless create CDI mappings (into containers run with--fakeroot
, for example). - A container run as root, or with
--fakeroot
, has OCI default effective/permitted capabilities. - An
--env-file
is evaluated with respect to the host environment, to match native mode behaviour. - If the kernel does not support unprivileged overlays, OCI-mode will attempt to
use
fuse-overlayfs
andfusermount
for overlay mounting and unmounting. - Support for thee
SINGULARITY_CONTAINLIBS
env var, to specify libraries to bind into/.singularity.d/libs/
in the container. - Support for running OCI-SIF images directly from
docker://
,http://
,https://
andoras://
URIs. - A new
--no-compat
flag can be used with OCI-mode to mirror singularity's historic native mode behavior on a variety of settings, instead of setting them the way other OCI runtimes typically do:$HOME
,/tmp
,/var/tmp
are bind mounted from the host.- The full
/dev
is bind mounted from the host, unlessmount dev = minimal
insingularity.conf
(requirescrun
, not applied withrunc
). bind path
entries insingularity.conf
are mounted into the container.- The current working directory is mounted into the container, and is the entry point into the container.
- The container is read-only unless
--writable-tmpfs
is also used. - The host umask is propagated into the container, unless
--no-umask
is also used. - When a native (non-OCI-SIF) image is run in OCI-mode, environment variables will be shell evaluated on container startup.
- The
pull
command now accepts a new flag--oci
for OCI image sources. This will create an OCI-SIF image rather than convert to Singularity's native container format. - OCI-SIF containers can be pushed/pulled to/from OCI registries as single file
artifacts using
oras://
URIs. - OCI-SIF containers can be pushed/pulled to/from registries as OCI images, with
a single squashfs layer, using
docker://
URIs. - A new
oci mode
directive insingularity.conf
can be set to true to enable OCI-mode by default. It can be negated with a new--no-oci
command line flag.
See the admin guide and user guide for full requirements of OCI-mode and usage information.
- RPM packages now use
/var/lib/singularity
(rather than/var/singularity
) to store local state files. - Bash completions are now install to the modern
share/bash-completion/completions
location, rather than underetc
. - The
--vm
and related flags to start singularity inside a VM have been removed. This functionality was related to the retired Singularity Desktop / SyOS projects. - Singularity uses
squashfuse_ll
/squashfuse
, which is now built from a git submodule unless--without-squashfuse
is specified as an argument tomconfig
. When built with--without-squashfuse
,squashfuse_ll
orsquashfuse
will be located onPATH
. Version 0.2.0 or later is required.
- The commands related to OCI/Docker registries that were under
remote
have been moved to their own, dedicatedregistry
command. Runsingularity help registry
for more information. - The
remote list
subcommand now outputs only remote endpoints (with keyservers and OCI/Docker registries having been moved to separate commands), and the output has been streamlined. - Adding a new remote endpoint using the
singularity remote add
command will now set the new endpoint as default. This behavior can be suppressed by supplying the--no-default
(or-n
) flag toremote add
. - The keyserver-related commands that were under
remote
have been moved to their own, dedicatedkeyserver
command. Runsingularity help keyserver
for more information. - Improved the clarity of
singularity key list
output. --cwd
is now the preferred form of the flag for setting the container's working directory, though--pwd
is still supported for compatibility.
- The way
--home
is handled when running as root (e.g.sudo singularity
) or with--fakeroot
has changed. Previously, we were only modifying theHOME
environment variable in these cases, while leaving the container's/etc/passwd
file unchanged (with its homedir field pointing to/root
, regardless of the value passed to--home
). With this change, both the value ofHOME
and the contents of/etc/passwd
in the container will reflect the value passed to--home
. - Bind mounts are now performed in the order of their occurrence on the command
line, or within the value of the
SINGULARITY_BIND
environment variable. (Previously, image-mounts were always performed first, regardless of order.) - Default OCI config generated with
singularity mount
no longer sets any inheritable / ambient capabilites, matching other OCI runtimes. singularity oci mount
now uses, and requires,squashfuse_ll
orsquashfuse
to mount a SIF image to an OCI bundle. Note thatsquashfuse_ll
is built with singularity unless--without-squashfuse
is passed tomconfig
.- The current working directory is created in the container when it doesn't
exist, so that it can be entered. You must now specify
--no-mount home,cwd
instead of just--no-mount home
to avoid mounting from$HOME
if you runsingularity
from inside$HOME
. - If the path of the current working directory in the container and on the host contain symlinks to different locations, it will not be mounted.
- Templating support for definition files: users can now define variables in
definition files via a matching pair of double curly brackets. Variables of
the form
{{ variable }}
will be replaced by a value defined either by avariable=value
entry in the%arguments
section of the definition file, or through new build options--build-arg
or--build-arg-file
. - Added
--secret
flag (shorthand:-s
) tokey remove
subcommand, to allow removal of a private key by fingerprint. - Added
--private
as a synonym for--secret
inkey list
,key export
, andkey remove
subcommands. - The
remote status
command will now print the username, realname, and email of the logged-in user, if available. - The
cache
commands now accept--type oci-sif
to list and clean cached OCI-SIF image conversions of OCI sources. - The
instance start
command now accepts an optional--app <name>
argument which invokes start script within the%appstart <name>
section in the definition file. Theinstance stop
command still only requires the instance name. - A new
--no-pid
flag forsingularity run/shell/exec
disables the PID namespace inferred by--containall
and--compat
. - A new
--platform
flag can be used to specify anOS/Architecture[/Variant]
when pulling images from OCI or library sources. When pulling from library sources the optional variant is ignored. - The
--arch
flag can now be used to specify a required architecture when pulling images from OCI, as well as library sources. - Execution flows that unpack an image into a temporary sandbox dir can now be
disabled, by setting "tmp sandbox = no" in
singularity.conf
or by passing--no-tmp-sandbox
to the relevantrun / shell / exec
command.
- Support for image driver plugins, deprecated at 3.11, has been removed.
Unprivileged kernel overlay is supported without a plugin. In
singularity.conf
, theimage driver
directive has been removed, andenable overlay
no longer supports thedriver
option. - Changes in
pkg/build/types.Definition
struct. New.FullRaw
field introduced, which always contains the raw data for the entire definition file. Behavior of.Raw
field has changed: for multi-stage builds parsed withpkg/build/types/parser.All()
,.Raw
contains the raw content of a single build stage. Otherwise, it is equal to.FullRaw
. - The SingularityCE go module is now
github.com/sylabs/singularity/v4
, reflecting the major version of the application.
- Fix interaction between
--workdir
when given relative path and--scratch
. - Set correct
$HOME
in--oci
mode whenmount home = no
insingularity.conf
. - Lookup and store user/group information in stage one prior to entering any namespaces to fix issue with winbind not correctly lookup user/group information when using user namespace.
- Caching of OCI images is now architecture aware. This fixes behaviour where a user's home directory is shared between systems of different architectures.
- Fix compilation with the
mconfig
-b
option (custom builddir).
- If commands that expect an image file are given an OCI-SIF image, an error will be generated advising the user that this format is only supported in versions 4.0 and up.
- Improved help text for
compile
andinstall
subcommands ofplugin
command. Thanks to tonghuaroot (https://github.com/tonghuaroot) for the suggested improvements.
- Add
xino=on
mount option for writable kernel overlay mount points to fix inode numbers consistency after kernel cache flush.
- The
tap
CNI plugin, new to github.com/containernetworking/plugins v1.3.0, is now provided. - Added
remote get-login-password
subcommand that allows the user to retrieve a CLI token to interact with the OCI registry of a Singularity Enterprise instance. - Added
--no-setgroups
flag for--fakeroot
builds and run/shell/exec. This prevents thesetgroups
syscall being used on the container process in the fakeroot user namespace. Maintains access from within the user namespace to files on the host that have permissions based on supplementary group membership. Note that supplementary groups are mapped tonobody
in the container, andchgrp
,newgrp
, etc. cannot be used. - Added ability to set a custom user config directory (default
$HOME/.singularity
) via the newSINGULARITY_CONFIGDIR
environment variable.
- In
--oci
mode, do not attempt to use unprivileged overlay on systems that do not support it. - Fix dropped "n" characters on some platforms in definition file stored as part of SIF metadata.
- Pass STDIN to
--oci
containers correctly, to fix piping input to a container. - Fix compilation on 32-bit systems.
- Fix seccomp filters to allow mknod/mknodat syscalls to create pipe/socket and character devices with device number 0 for fakeroot builds.
- Fix freeze when copying files between stages in an unprivileged proot build.
- Fix non-POSIX sh operator in mconfig.
- Correct internal name for CAP_BLOCK_SUSPEND.
--oci
mode now provides a writable container by default, using a tmpfs overlay. This improves parity with--compat
mode in the native runtime, as--compat
enables--writable-tmpfs
.
- Ensure the
allow kernel squashfs
directive insingularity.conf
applies to encrypted squashfs filesystems in a SIF.
- OCI mode now supports
--hostname
(requires UTS namespace, therefore this flag will infer--uts
). - OCI mode now supports
--scratch
(shorthand:-S
) to mount a tmpfs scratch directory in the container. - Support
--pwd
in OCI mode. - OCI mode now supports
--home
. Supplying a single location (e.g.--home /myhomedir
) will result in a new tmpfs directory being created at the specified location inside the container, and that dir being set as the in-container user's home dir. Supplying two locations separated by a colon (e.g.--home /home/user:/myhomedir
) will result in the first location on the host being bind-mounted as the second location in-container, and set as the in-container user's home dir. - OCI mode now handles
--dns
andresolv.conf
on par with native mode: the--dns
flag can be used to pass a comma-separated list of DNS servers that will be used in the container; if this flag is not used, the container will use the sameresolv.conf
settings as the host. - Added
allow kernel squashfs
directive tosingularity.conf
. Defaults toyes
. When set to no, Singularity will not mount squashfs filesystems using the kernel squashfs driver. - Added
allow kernel extfs
directive tosingularity.conf
. Defaults toyes
. When set to no, Singularity will not mount extfs filesystems using the kernel extfs driver.
- Require
runc
in RPM packages built on SLES, notcrun
, becausecrun
is part of the Package Hub community repository that may not be enabled. SingularityCE will still prefercrun
if it has been installed. - Use
/dev/loop-control
for loop device creation, to avoid issues with recent kernel patch wheremax_loop
is not set. - Always request inner userns in
--oci
mode without--fakeroot
, so that inner id mapping is applied correctly. - Use correct target uid/gid for inner id mappings in
--oci
mode. - Avoid
runc
cgroup creation error when using--oci
from a root-owned cgroup (e.g. ssh login session scope). - Pass host's
TERM
environment variable to container in OCI mode. Can be overridden by settingSINGULARITYENV_TERM
on host. - Honour
config passwd
andconfig group
directives fromsingularity.conf
in--oci
mode. - Honour
mount proc
/mount sys
/mount tmp
/mount home
directives fromsingularity.conf
in--oci
mode. - Corrected
singularity.conf
comment, to refer to correct file as source of default capabilities whenroot default capabilities = file
.
- Add
setopt
definition file header for theyum
bootstrap agent. Thesetopt
value is passed toyum / dnf
using the--setopt
flag. This permits setting e.g.install_weak_deps=False
to bootstrap recent versions of Fedora, wheresystemd
(a weak dependency) cannot install correctly in the container. Seeexamples/Fedora
for an example defintion file. - Warn user that a
yum
bootstrap of an older distro may fail if the host rpm_db_backend
is notbdb
.
- Fix implied
--writable-tmpfs
with--nvccli
, to avoid r/o filesytem error. - Avoid incorrect error when requesting fakeroot network.
- Pass computed
LD_LIBRARY_PATH
to wrapped unsquashfs. Fixes issues whereunsquashfs
on host uses libraries in non-default paths. - Show correct memory limit in
instance stats
when a limit is set. - Ensure consistent binding of libraries under
--nv/--rocm
when duplicate<library>.so[.version]
files are listed byldconfig -p
. - Fix systemd cgroup manager error when running a container as a non-root
user with
--oci
, on systems with cgroups v1 andrunc
. - Fix joining cgroup of instance started as root, with cgroups v1, non-default cgroupfs manager, and no device rules.
- Show standard output of yum bootstrap if log level is verbose or higher.
- Image driver plugins, implementing the
RegisterImageDriver
callback, are deprecated and will be removed in 4.0. Support for the example plugin, permitting Ubuntu unprivileged overlay functionality, has been replaced with direct support for kernel unprivileged overlay. - When the kernel supports unprivileged overlay mounts in a user namespace, the container will be constructed using an overlay instead of underlay layout.
crun
will be used as the low-level OCI runtime, when available, rather thanrunc
. Ifcrun
is not available,runc
will be used.sessiondir maxsize
insingularity.conf
now defaults to 64 MiB for new installations. This is an increase from 16 MiB in prior versions.- Instances are started in a cgroup, by default, when run as root or when
unified cgroups v2 with systemd as manager is configured. This allows
singularity instance stats
to be supported by default when possible.
- Support for a custom hashbang in the
%test
section of a Singularity recipe (akin to the runscript and start sections). - Non-root users can now build from a definition file, on systems that do not
support
--fakeroot
. This requires the statically builtproot
command (https://proot-me.github.io/) to be available on the userPATH
. These builds:- Do not support
arch
/debootstrap
/yum
/zypper
bootstraps. Uselocalimage
,library
,oras
, or one of the docker/oci sources. - Do not support
%pre
and%setup
sections. - Run the
%post
sections of a build in the container as an emulated root user. - Run the
%test
section of a build as the non-root user, likesingularity test
. - Are subject to any restrictions imposed in
singularity.conf
. - Incur a performance penalty due to
proot
'sptrace
based interception of syscalls. - May fail if the
%post
script requires privileged operations thatproot
cannot emulate.
- Do not support
- Instances started by a non-root user can use
--apply-cgroups
to apply resource limits. Requires cgroups v2, and delegation configured via systemd. - A new
instance stats
command displays basic resource usage statistics for a specified instance, running within a cgroup.
--writable-tmpfs
is now available when running unprivileged, or explicitly requesting a user namespace, on systems with a kernel that supports unprivileged overlay mounts in a user namespace.- The
--no-mount
flag now accepts the valuebind-paths
to disable mounting of allbind path
entries insingularity.conf
. - Persistent overlays (
--overlay
) from a directory are now available when running unprivileged, or explicitly requesting a user namespace, on systems with a kernel that supports unprivileged overlay mounts in a user namespace. - Add
--sparse
flag tooverlay create
command to allow generation of a sparse ext3 overlay image.
- Support for
DOCKER_HOST
parsing when usingdocker-daemon://
DOCKER_USERNAME
andDOCKER_PASSWORD
supported withoutSINGULARITY_
prefix.- A new
--oci
flag forrun/exec/shell
enables the experimental OCI runtime mode. This mode:- Runs OCI container images from an OCI bundle, using
runc
orcrun
. - Supports
docker://
,docker-archive:
,docker-daemon:
,oci:
,oci-archive:
image sources. - Does not support running Singularity SIF, SquashFS, or EXT3 images.
- Provides an environment similar to Singularity's native runtime, running
with
--compat
. - Supports the following options / flags. Other options are not yet supported:
--fakeroot
for effective root in the container. Requires subuid/subgid mappings.- Bind mounts via
--bind
or--mount
. No image mounts. - Additional namespaces requests with
--net
,--uts
,--user
. - Container environment variables via
--env
,--env-file
, andSINGULARITYENV_
host env vars. --rocm
to bind ROCm GPU libraries and devices into the container.--nv
to bind Nvidia driver / basic CUDA libraries and devices into the container.--apply-cgroups
, and the--cpu*
,--blkio*
,--memory*
,--pids-limit
flags to apply resource limits.
- Runs OCI container images from an OCI bundle, using
- Instance name is available inside an instance via the new
SINGULARITY_INSTANCE
environment variable.
- The
sign
command now supports signing with non-PGP key material by specifying the path to a private key via the--key
flag. - The
verify
command now supports verification with non-PGP key material by specifying the path to a public key via the--key
flag. - The
verify
command now supports verification with X.509 certificates by specifying the path to a certificate via the--certificate
flag. By default, the system root certificate pool is used as trust anchors unless overridden via the--certificate-roots
flag. A pool of intermediate certificates that are not trust anchors, but can be used to form a certificate chain can also be specified via the--certificate-intermediates
flag. - Support for online verification checks of x509 certificates using OCSP
protocol. (introduced flag:
verify --ocsp-verify
)
- Add new Linux capabilities:
CAP_PERFMON
,CAP_BPF
,CAP_CHECKPOINT_RESTORE
. - A new
--reproducible
flag for./mconfig
will configure Singularity so that its binaries do not contain non-reproducible paths. This disables plugin functionality.
- In
--rocm
mode, the whole of/dev/dri
is now bound into the container when--contain
is in use. This makes/dev/dri/render
devices available, required for later ROCm versions. - Overlay is blocked on the
panfs
filesystem, allowing sandbox directories to be run frompanfs
without error. - Avoid UID / GID readonly var warnings with
--env-file
.
- Significant reduction in the use of network image sources in the e2e tests.
- Improved parallelization and use of image caches in the e2e tests.
- The
e2e-test
makefile target now accepts an argumentE2E_GROUPS
to only run specified groups of end to end tests. E.g.make -C builddir e2e-test E2E_GROUPS=VERSION,HELP
will run end to end tests in theVERSION
andHELP
groups only. - The
e2e-test
makefile target now accepts an argumentE2E_TESTS
which is a regular expression specifying the names of (top level) end to end tests that should be run. E.g.make -C builddir e2e-test E2E_TESTS=^semantic
will only run end to end tests with a name that begins withsemantic
. TheseE2E_
variables offer an alternative to the-run
flag, which may be easier to use given the structure of e2e tests.
- CVE-2022-23538:
The github.com/sylabs/scs-library-client dependency included in SingularityCE
>=3.10.0, <3.10.5 may leak user credentials to a third-party service via HTTP
redirect. This issue is limited to
library://
access to specific Singularity Enterprise 1.x or 3rd party library configurations, which implement a concurrent multi-part download flow. Access to Singularity Enterprise 2.x, or Singularity Container Services (cloud.sylabs.io), does not trigger the vulnerable flow. See the linked advisory for full details.
- Ensure
make dist
doesn't include conmon binary or intermediate files. - Do not hang on pull from http(s) source that doesn't provide a content-length.
- Avoid hang on fakeroot cleanup under high load seen on some distributions / kernels.
- CVE-2022-39237: The github.com/sylabs/sif/v2 dependency included in SingularityCE <=3.10.3 does not verify that the hash algorithm(s) used are cryptographically secure when verifying digital signatures. This release updates to sif v2.8.1 which corrects this issue. See the linked advisory for references and a workaround.
- Ensure bootstrap_history directory is populated with previous definition files, present in source containers used in a build.
- Added EL9 package builds to CI for GitHub releases.
- Ensure no empty
if
branch is present in generated OCI image runscripts. Would prevent execution of container by other tools that are not using mvdan.cc/sh.
- Debug output can now be enabled by setting the
SINGULARITY_DEBUG
env var. - Debug output is now shown for nested
singularity
calls, in wrappedunsquashfs
image extraction, and build stages.
- Fix test code that implied
%test -c <shell>
was supported - it is not. - Fix compilation on
mipsel
.
master
branch of GitHub repository has been renamed tomain
.oci mount
setsProcess.Terminal: true
when creating an OCIconfig.json
, so thatoci run
provides expected interactive behavior by default.- Default hostname for
oci mount
containers is nowsingularity
instead ofmrsdalloway
. - systemd is now supported and used as the default cgroups manager. Set
systemd cgroups = no
insingularity.conf
to manage cgroups directly via the cgroupfs. - The
singularity oci
command group now usesrunc
to manage containers. - The
singularity oci
commands useconmon
which is built from a git submodule, unless--without-conmon
is specified as an argument tomconfig
, in which case Singularity will searchPATH
for conmon. Version >=2.0.24 of conmon is required. - The
singularity oci
flags--sync-socket
,--empty-process
, and--timeout
have been removed. - Don't prompt for y/n to overwrite an existing file when build is called from a non-interactive environment. Fail with an error.
- Plugins must be compiled from inside the SingularityCE source directory,
and will use the main SingularityCE
go.mod
file. Required for Go 1.18 support. - seccomp support is not disabled automatically in the absence of
seccomp headers at build time. Run
mconfig
using--without-seccomp
and--without-conmon
to disable seccomp support and building ofconmon
(which requires seccomp headers). - SingularityCE now requires squashfs-tools >=4.3, which is satisfied by current EL / Ubuntu / Debian and other distributions.
- Added
--no-eval
to the list of flags set by the OCI/Docker--compat
mode (see below).
- Updated seccomp support allows use of seccomp profiles that set an error
return code with
errnoRet
anddefaultErrnoRet
. Previously EPERM was hard coded. The exampleetc/seccomp-profiles/default.json
has been updated. - Native cgroups v2 resource limits can be specified using the
[unified]
key in a cgroups toml file applied via--apply-cgroups
. - The
--no-mount
flag &SINGULARITY_NO_MOUNT
env var can now be used to disable abind path
entry fromsingularity.conf
by specifying the absolute path to the destination of the bind. - Non-root users can now use
--apply-cgroups
withrun/shell/exec
to limit container resource usage on a system using cgroups v2 and the systemd cgroups manager. - Added
--cpu*
,--blkio*
,--memory*
,--pids-limit
flags to apply cgroups resource limits to a container directly. - Allow experimental direct mount of SIF images with
squashfuse
in user-namespace / no-setuid mode. - New action flag
--no-eval
which:- Prevents shell evaluation of
SINGULARITYENV_ / --env / --env-file
environment variables as they are injected in the container, to match OCI behavior. Applies to all containers. - Prevents shell evaluation of the values of
CMD / ENTRYPOINT
and command line arguments for containers run or built directly from an OCI/Docker source. Applies to newly built containers only, usesingularity inspect
to check version that container was built with.
- Prevents shell evaluation of
- Add support for
%files
section in remote builds, when a compatible remote is used.
- Allow
newgidmap / newuidmap
that use capabilities instead of setuid root. - Corrected
key search
output for results from some servers, and keys with multiple names. - Pass through a literal
\n
in host environment variables to container. - Address 401 error pulling from private library:// projects.
- Correctly launch CleanupHost process only when needed in
--sif-fuse
flow. - Add specific error for unreadable image / overlay file.
- Ensure cgroups device limits are default allow per past behavior.
- Improve error message when remote build server does not support the
%files
section. - Fix non-root instance join with unprivileged systemd managed cgroups, when join is from outside a user-owned cgroup.
- Use HEAD request when checking digest of remote OCI image sources, with GET as a fall-back. Greatly reduces Singularity's impact on Docker Hub API limits.
- Add package build for Ubuntu 22.04 LTS.
- Do not truncate environment variables with commas.
- Fix error when pushing to host-less
library://
URIs.
- Support nvidia-container-cli v1.8.0 and above, via fix to capability set.
- Avoid cleanup panic when invalid file specified for --apply-cgroups.
- SingularityCE now supports the
riscv64
architecture.
- Correct library bindings for
unsquashfs
containment. Fixes errors where resolved library filename does not match library filename in binary (e.g. EL8, POWER9 with glibc-hwcaps).
make install
now installs man pages. A separatemake man
is not required.
- GitHub .deb packages correctly include man pages.
- Update dependency to correctly unset variables in container startup environment processing. Fixes regression in v3.9.2.
- Remove subshell overhead when processing large environments on container startup.
- Address timeout in library pull single stream download.
- Ensure MIGs are visible with
--nvccli
in non-contained mode, to match the legacy GPU binding behaviour. - Avoid fd leak in loop device transient error path.
- Ensure
gengodep
in build uses vendor dir when present. - Fix
source
of a script onPATH
and scoping of environment variables in definition files (via dependency update). - Ensure a local build does not fail unnecessarily if a keyserver config cannot be retrieved from the remote endpoint.
- Correct documentation for sign command r.e. source of key index.
- Restructure loop device discovery to address an issue where a transient
EBUSY
error could lead to failure under Arvados. Also greedily try for a working loop device, rather than perform delayed retries on encounteringEAGAIN
, since we hold an exclusive lock which can block other processes.
This is a security release for SingularityCE 3.9, addressing a security issue in SingularityCE's dependencies.
- CVE-2021-41190 / GHSA-77vh-xpmg-72qh: OCI specifications allow ambiguous documents that contain both "manifests" and "layers" fields. Interpretation depends on the presence / value of a Content-Type header. SingularityCE dependencies handling the retrieval of OCI images have been updated to versions that reject ambiguous documents.
This is the first release of SingularityCE 3.9, the Community Edition of the Singularity container runtime hosted at https://github.com/sylabs/singularity.
- Building SingularityCE 3.9.0 requires go >=1.16. We now aim to support the two most recent stable versions of Go. This corresponds to the Go Release Maintenance Policy and Security Policy, ensuring critical bug fixes and security patches are available for all supported language versions.
- LABELs from Docker/OCI images are now inherited. This fixes a longstanding
regression from Singularity 2.x. Note that you will now need to use
--force
in a build to override a label that already exists in the source Docker/OCI container. - The source paths for
%files
lines in a definition file are no longer interpreted by a shell. This means that environment variable substitution is not performed. Previously, environment variables were substituted for source paths, but not destination paths, leading to unexpected copy behaviour. Globbing for source files will now follow the Gofilepath.Match
pattern syntax. - Removed
--nonet
flag, which was intended to disable networking for in-VM execution, but has no effect. --nohttps
flag has been deprecated in favour of--no-https
. The old flag is still accepted, but will display a deprecation warning.- Paths for
cryptsetup
,go
,ldconfig
,mksquashfs
,nvidia-container-cli
,unsquashfs
are now found at build time bymconfig
and written intosingularity.conf
. The path to these executables can be overridden by changing the value insingularity.conf
. - When calling
ldconfig
to find GPU libraries, singularity will not fall back to/sbin/ldconfig
if the configuredldconfig
errors. If installing in a Guix/Nix on environment on top of a standard host distribution you must setldconfig path = /sbin/ldconfig
to use the host distributionldconfig
to find GPU libraries. --nv
will not callnvidia-container-cli
to find host libraries, unless the new experimental GPU setup flow that employsnvidia-container-cli
for all GPU related operations is enabled (see below).- If a container is run with
--nvcli
and--contain
, only GPU devices specified via theNVIDIA_VISIBLE_DEVICES
environment variable will be exposed within the container. UseNVIDIA_VISIBLE_DEVICES=all
to access all GPUs inside a container run with--nvccli
. - Example log-plugin rewritten as a CLI callback that can log all commands executed, instead of only container execution, and has access to command arguments.
- The bundled reference CNI plugins are updated to v1.0.1. The
flannel
plugin is no longer included, as it is maintained as a separate plugin at: https://github.com/flannel-io/cni-plugin. If you use the flannel CNI plugin you should install it from this repository. - Instances are no longer created with an IPC namespace by default. An IPC
namespace can be specified with the
-i|--ipc
flag. - The behaviour of the
allow container
directives insingularity.conf
has been modified, to support more intuitive limitations on the usage of SIF and non-SIF container images. If you use these directives, you may need to make changes to singularity.conf to preserve behaviour.- A new
allow container sif
directive permits or denies usage of unencrypted SIF images, irrespective of the filesystem(s) inside the SIF. - The
allow container encrypted
directive permits or denies usage of SIF images with an encrypted root filesystem. - The
allow container squashfs/extfs
directives insingularity.conf
permit or deny usage of bare SquashFS and EXT image files only. - The effect of the
allow container dir
directive is unchanged.
- A new
--writable-tmpfs
can be used withsingularity build
to run the%test
section of the build with a ephemeral tmpfs overlay, permitting tests that write to the container filesystem.- The
--compat
flag for actions is a new short-hand to enable a number of options that increase OCI/Docker compatibility. Infers--containall, --no-init, --no-umask, --writable-tmpfs
. Does not use user, uts, or network namespaces as these may not be supported on many installations. remote add --insecure
may be used to configure endpoints that are only accessible via http.- The experimental
--nvccli
flag will usenvidia-container-cli
to setup the container for Nvidia GPU operation. SingularityCE will not bind GPU libraries itself. Environment variables that are used with Nvidia'sdocker-nvidia
runtime to configure GPU visibility / driver capabilities & requirements are parsed by the--nvccli
flag from the environment of the calling user. By default, thecompute
andutility
GPU capabilities are configured. Theuse nvidia-container-cli
option insingularity.conf
can be set toyes
to always usenvidia-container-cli
when supported. Note that in a setuid install,nvidia-container-cli
will be run as root with required ambient capabilities.--nvccli
is not currently supported in the hybrid fakeroot (setuid install +--fakeroot
) workflow. Please see documentation for more details. - The
--apply-cgroups
flag can be used to apply cgroups resource and device restrictions on a system using the v2 unified cgroups hierarchy. The resource restrictions must still be specified in the v1 / OCI format, which will be translated into v2 cgroups resource restrictions, and eBPF device restrictions. - A new
--mount
flag andSINGULARITY_MOUNT
environment variable can be used to specify bind mounts intype=bind,source=<src>,destination=<dst>[,options...]
format. This improves CLI compatibility with other runtimes, and allows binding paths containing:
and,
characters (using CSV style escaping). - Perform concurrent multi-part downloads for
library://
URIs. Uses 3 concurrent downloads by default, and is configurable insingularity.conf
or via environment variables.
- The
oci
commands will operate on systems that use the v2 unified cgroups hierarchy. - Ensure invalid values passed to
config global --set
cannot lead to an empty configuration file being written. - An invalid remote build source (bootstrap) will be identified before attempting to submit the build.
--no-https
now applies to connections made to library services specified inlibrary://<hostname>/...
URIs.
- Update
oras-go
dependency to address push failures to some registry configurations. - Implement context cancellation when a signal is received in several CLI commands.
- Fix regression when files
source
d from%environment
contain\
escaped shell builtins (fixes issue withsource
of conda profile.d script).
Additional changes include dependency updates for the SIF module (to v2.0.0), and migration to maintained versions of other modules. There is no change to functionality, on-disk SIF format etc.
singularity delete
will use the correct library service when the hostname is specified in thelibrary://
URI.singularity build
will use the correct library service when the hostname is specified in thelibrary://
URI / definition file.- Fix download of default
pacman.conf
inarch
bootstrap. - Call
debootstrap
with correct Debian arch when it is not identical to the value ofruntime.GOARCH
. E.g.ppc64el -> ppc64le
. - When destination is omitted in
%files
entry in definition file, ensure globbed files are copied to correct resolved path. - Return an error if
--tokenfile
used forremote login
to an OCI registry, as this is not supported. - Ensure repeated
remote login
to same URI does not create duplicate entries in~/.singularity/remote.yaml
. - Avoid panic when mountinfo line has a blank field.
- Properly escape single quotes in Docker
CMD
/ENTRYPOINT
translation. - Use host uid when choosing unsquashfs flags, to avoid selinux xattr errors
with
--fakeroot
on non-EL/Fedora distributions with recent squashfs-tools.
- Allow escaped
\$
in a SINGULARITYENV_ var to set a literal$
in a container env var. - Handle absolute symlinks correctly in multi-stage build
%copy from
blocks. - Fix incorrect reference in sandbox restrictive permissions warning.
This is the first release of SingularityCE 3.8.0, the Community Edition of the Singularity container runtime hosted at https://github.com/sylabs/singularity.
- The package name for this release is now
singularity-ce
. This name is used for the source tarball, output of anrpmbuild
, and displayed in--version
information. - The name of the top level directory in the source tarball from
make dist
now includes the version string.
- A new
overlay
command allows creation and addition of writable overlays. - Administrators can allow named users/groups to use specific CNI network
configurations. Managed by directives in
singularity.conf
. - The
build
command now honors--nv
,--rocm
, and--bind
flags, permitting builds that require GPU access or files bound in from the host. - A library service hostname can be specified as the first component of a
library://
URL. - Singularity is now relocatable for unprivileged installations only.
- Respect http proxy server environment variables in key operations.
- When pushing SIF images to
oras://
endpoints, work around Harbor & GitLab failure to accept theSifConfigMediaType
. - Avoid a
setfsuid
compilation warning on some gcc versions. - Fix a crash when silent/quiet log levels used on pulls from
shub://
andhttp(s)://
URIs. - Wait for dm device to appear when mounting an encrypted container rootfs.
Testing changes are not generally itemized. However, developers and contributors
should note that this release has modified the behavior of make test
for ease
of use:
make test
runs limited unit and integration tests that will not require docker hub credentials.make testall
runs the full unit/integration/e2e test suite that requires docker credentials to be set withE2E_DOCKER_USERNAME
andE2E_DOCKER_PASSWORD
environment variables.- Fix privilege handling issue with tests on Go >=1.16.
Singularity 3.7.4 is the most recent stable release of Singularity prior to Sylabs' fork from https://github.com/hpcng/singularity
The 3.7.4 release is identical to https://github.com/hpcng/singularity/releases/tag/v3.7.4 and is provided for convenience to users arriving from outdated links.
- CVE-2021-32635: Due to incorrect use of a default URL, singularity action commands (run/shell/exec) specifying a container using a library:// URI will always attempt to retrieve the container from the default remote endpoint (cloud.sylabs.io) rather than the configured remote endpoint. An attacker may be able to push a malicious container to the default remote endpoint with a URI that is identical to the URI used by a victim with a non-default remote endpoint, thus executing the malicious container.
- CVE-2021-29136:
A dependency used by Singularity to extract docker/OCI image layers can be
tricked into modifying host files by creating a malicious layer that has a
symlink with the name "." (or "/"), when running as root. This vulnerability
affects a
singularity build
orsingularity pull
as root, from a docker or OCI source.
- Fix progress bar display when source image size is unknown.
- Fix a memory usage / leak issue when building from an existing image file.
- Fix to allow use of
--library
flag to point push/pull at default cloud library when another remote is in use. - Address false positive loop test errors, and an e2e test registry setup issue.
- Accommodate /sys/fs/selinux mount changes on kernel 5.9+.
- Fix loop devices file descriptor leak when shared loop devices is enabled.
- Use MaxLoopDevices variable from config file in all appropriate locations.
- Use -buildmode=default (non pie) on ppc64le to prevent crashes when using plugins.
- Remove spurious warning in parseTokenSection()
- e2e test fixes for new kernels, new unsquashfs version.
- Show correct web URI for detached builds against alternate remotes.
- The singularity binary is now relocatable when built without setuid support
- Allow configuration of global custom keyservers, separate from remote endpoints.
- Add a new global keyring, for public keys only (used for ECL).
- The
remote login
command now supports authentication to Docker/OCI registries and custom keyservers. - New
--exclusive
option forremote use
allows admin to lock usage to a specific remote. - A new
Fingerprints:
header in definition files will check that a SIF source image can be verified, and is signed with keys matching all specified fingerprints. - Labels can be set dynamically from a build's
%post
section by setting them in theSINGULARITY_LABELS
environment variable. - New
build-arch
label is automatically set to the architecture of the host during a container build. - New
-D/--description
flag forsingularity push
sets description for a library container image. singularity remote status
shows validity of authentication token if set.singularity push
reports quota usage and URL on successful push to a library server that supports this.- A new
--no-mount
flag for actions allows a user to disable proc/sys/dev/devpts/home/tmp/hostfs/cwd mounts, even if they are enabled insingularity.conf
.
- When actions (run/shell/exec...) are used without
--fakeroot
the umask from the calling environment will be propagated into the container, so that files are created with expected permissions. Use the new--no-umask
flag to return to the previous behaviour of setting a default 0022 umask. - Container metadata, environment, scripts are recorded in a descriptor in
builds to SIF files, and
inspect
will use this if present. - The
--nv
flag for NVIDIA GPU support will not resolve libraries reported bynvidia-container-cli
via the ld cache. Will instead respect absolute paths to libraries reported by the tool, and bind all versioned symlinks to them. - General re-work of the
remote login
flow, adds prompts and token verification before replacing an existing authentication token. - The Execution Control List (ECL) now verifies container fingerprints using the new global keyring. Previously all users would need relevant keys in their own keyring.
- The SIF layer mediatype for ORAS has been changed to
application/vnd.sylabs.sif.layer.v1.sif
reflecting the published opencontainers/artifacts value. SINGULARITY_BIND
has been restored as an environment variable set within a running container. It now reflects all user binds requested by the-B/--bind
flag, as well as viaSINGULARITY_BIND[PATHS]
.singularity search
now correctly searches for container images matching the host architecture by default. A new--arch
flag allows searching for other architectures. A new results format gives more detail about container image results, while users and collections are no longer returned.
- Support larger definition files, environments etc. by passing engine configuration in the environment vs. via socket buffer.
- Ensure
docker-daemon:
and other source operations respectSINGULARITY_TMPDIR
for all temporary files. - Support double quoted filenames in the
%files
section of build definitions. - Correct
cache list
sizes to show KiB with powers of 1024, matchingdu
etc. - Don't fail on
enable fusemount=no
when no fuse mounts are needed. - Pull OCI images to the correct requested location when the cache is disabled.
- Ensure
Singularity>
prompt is set when container has no environment script, or singularity is called through a wrapper script. - Avoid build failures in
yum/dnf
operations against the 'setup' package onRHEL/CentOS/Fedora
by ensuring staged/etc/
files do not match distro default content. - Failed binds to
/etc/hosts
and/etc/localtime
in a container run with--contain
are no longer fatal errors. - Don't initialize the cache for actions where it is not required.
- Increase embedded shell interpreter timeout, to allow slow-running environment scripts to complete.
- Correct buffer handling for key import to allow import from STDIN.
- Reset environment to avoid
LD_LIBRARY_PATH
issues when resolving dependencies for theunsquashfs
sandbox. - Fall back to
/sbin/ldconfig
ifldconfig
onPATH
fails while resolving GPU libraries. Fixes problems on systems using Nix / Guix. - Address issues caused by error code changes in
unsquashfs
version 4.4. - Ensure
/dev/kfd
is bound into container for ROCm when--rocm
is used with--contain
. - Tolerate comments on
%files
sections in build definition files. - Fix a loop device file descriptor leak.
- A change in Linux kernel 5.9 causes
--fakeroot
builds to fail with a/sys/fs/selinux
remount error. This will be addressed in Singularity v3.7.1.
Singularity 3.6.4 addresses the following security issue.
- CVE-2020-15229: Due to insecure handling of path traversal and the lack of path sanitization within unsquashfs (a distribution provided utility used by Singularity), it is possible to overwrite/create files on the host filesystem during the extraction of a crafted squashfs filesystem. Affects unprivileged execution of SIF / SquashFS images, and image builds from SIF / SquashFS images.
- Update scs-library-client to support
library://
backends using an 3rd party S3 object store that does not strictly conform to v4 signature spec.
Singularity 3.6.3 addresses the following security issues.
-
CVE-2020-25039: When a Singularity action command (run, shell, exec) is run with the fakeroot or user namespace option, Singularity will extract a container image to a temporary sandbox directory. Due to insecure permissions on the temporary directory it is possible for any user with access to the system to read the contents of the image. Additionally, if the image contains a world-writable file or directory, it is possible for a user to inject arbitrary content into the running container.
-
CVE-2020-25040: When a Singularity command that results in a container build operation is executed, it is possible for a user with access to the system to read the contents of the image during the build. Additionally, if the image contains a world-writable file or directory, it is possible for a user to inject arbitrary content into the running build, which in certain circumstances may enable arbitrary code execution during the build and/or when the built container is run.
- The value for maximum number of loop devices in the config file is now used everywhere instead of redefining this value
- Add CAP_MKNOD in capability bounding set of RPC to fix issue with cryptsetup when decrypting image from within a docker container.
- Fix decryption issue when using both IPC and PID namespaces.
- Fix unsupported builtins panic from shell interpreter and add umask support for definition file scripts.
- Do not load keyring in prepare_linux if ECL not enabled.
- Ensure sandbox option overrides remote build destination.
- Add --force option to
singularity delete
for non-interactive workflows.
- Default to current architecture for
singularity delete
.
- Respect current remote for
singularity delete
command. - Allow
rw
as a (noop) bind option. - Fix capability handling regression in overlay mount.
- Fix LD_LIBRARY_PATH environment override regression with
--nv/--rocm
. - Fix environment variable duplication within singularity engine.
- Use
-user-xattrs
for unsquashfs to avoid error with rootless extraction using unsquashfs 3.4 (Ubuntu 20.04). - Correct
--no-home
message for 3.6 CWD behavior. - Don't fail if parent of cache dir not accessible.
- Fix tests for Go 1.15 Ctty handling.
- Fix additional issues with test images on ARM64.
- Fix FUSE e2e tests to use container ssh_config.
- Support compilation with
FORTIFY_SOURCE=2
and build inpie
mode withfstack-protector
enabled (#5433).
- Provide advisory message r.e. need for
upper
andwork
to exist in overlay images. - Use squashfs mem and processor limits in squashfs gzip check.
- Ensure build destination path is not an empty string - do not overwrite CWD.
- Don't unset PATH when interpreting legacy /environment files.
Singularity 3.6.0 introduces a new signature format for SIF images, and changes to the signing / verification code to address:
- CVE-2020-13845 In Singularity 3.x versions below 3.6.0, issues allow the ECL to be bypassed by a malicious user.
- CVE-2020-13846 In
Singularity 3.5 the
--all / -a
option tosingularity verify
returns success even when some objects in a SIF container are not signed, or cannot be verified. - CVE-2020-13847 In Singularity 3.x versions below 3.6.0, Singularity's sign and verify commands do not sign metadata found in the global header or data object descriptors of a SIF file, allowing an attacker to cause unexpected behavior. A signed container may verify successfully, even when it has been modified in ways that could be exploited to cause malicious behavior.
Please see the published security advisories at https://github.com/hpcng/singularity/security/advisories for full detail of these security issues.
Note that the new signature format is necessarily incompatible with Singularity < 3.6.0 - e.g. Singularity 3.5.3 cannot verify containers signed by 3.6.0.
We thank Tru Huynh for a report that led to the review of, and changes to, the signature implementation.
- Singularity now supports the execution of minimal Docker/OCI containers that
do not contain
/bin/sh
, e.g.docker://hello-world
. - A new cache structure is used that is concurrency safe on a filesystem that
supports atomic rename. If you downgrade to Singularity 3.5 or older after
using 3.6 you will need to run
singularity cache clean
. - A plugin system rework adds new hook points that will allow the development of plugins that modify behavior of the runtime. An image driver concept is introduced for plugins to support new ways of handling image and overlay mounts. Plugins built for <=3.5 are not compatible with 3.6.
- The
--bind
flag can now bind directories from a SIF or ext3 image into a container. - The
--fusemount
feature to mount filesystems to a container via FUSE drivers is now a supported feature (previously an experimental hidden flag). This permits users to mount e.g.sshfs
andcvmfs
filesystems to the container at runtime. - A new
-c/--config
flag allows an alternativesingularity.conf
to be specified by theroot
user, or all users in an unprivileged installation. - A new
--env
flag allows container environment variables to be set via the Singularity command line. - A new
--env-file
flag allows container environment variables to be set from a specified file. - A new
--days
flag forcache clean
allows removal of items older than a specified number of days. Replaces the--name
flag which is not generally useful as the cache entries are stored by hash, not a friendly name. - A new '--legacy-insecure' flag to
verify
allows verification of SIF signatures in the old, insecure format. - A new '-l / --logs' flag for
instance list
that shows the paths to instance STDERR / STDOUT log files. - The
--json
output ofinstance list
now include paths to STDERR / STDOUT log files.
- New signature format (see security fixes above).
- Environment variables prefixed with
SINGULARITYENV_
always take precedence over variables withoutSINGULARITYENV_
prefix. - The
%post
build section inherits environment variables from the base image. %files from ...
will now follow symlinks for sources that are directly specified, or directly resolved from a glob pattern. It will not follow symlinks found through directory traversal. This mirrors Docker multi-stage COPY behaviour.- Restored the CWD mount behaviour of v2, implying that CWD path is not recreated inside container and any symlinks in the CWD path are not resolved anymore to determine the destination path inside container.
- The
%test
build section is executed the same manner assingularity test image
. --fusemount
with thecontainer:
default directive will foreground the FUSE process. Usecontainer-daemon:
for previous behavior.- Fixed spacing of
singularity instance list
to be dynamically changing based off of input lengths instead of fixed number of spaces to account for long instance names.
- Removed
--name
flag forcache clean
; replaced with--days
. - Deprecate
-a / --all
option tosign/verify
as new signature behavior makes this the default.
- Don't try to mount
$HOME
when it is/
(e.g.nobody
user). - Process
%appinstall
sections in order when building from a definition file. - Ensure
SINGULARITY_CONTAINER
,SINGULARITY_ENVIRONMENT
and the custom shell prompt are set inside a container. - Honor insecure registry settings from
/etc/containers/registries.conf
. - Fix
http_proxy
env var handling inyum
bootstrap builds. - Disable log colorization when output location is not a terminal.
- Check encryption keys are usable before beginning an encrypted build.
- Allow app names with non-alphanumeric characters.
- Use the
base
metapackage for arch bootstrap builds - arch no longer has abase
group. - Ensure library client messages are logged with
--debug
. - Do not mount
$HOME
with--fakeroot --contain
. - Fall back to underlay automatically when using a sandbox on GPFS.
- Fix Ctrl-Z handling - propagation of signal.
The following minor behaviour changes have been made in 3.5.3 to allow correct operation on CRAY CLE6, and correct an issue with multi-stage image builds that was blocking use by build systems such as Spack:
- Container action scripts are no longer bound in from
etc/actions.d
on the host. They are created dynamically and inserted at container startup. %files from ...
will no longer follow symlinks when copying between stages in a multi stage build, as symlinks should be copied so that they resolve identically in later stages. Copying%files
from the host will still maintain previous behavior of following links.
- Bind additional CUDA 10.2 libs when using the
--nv
option withoutnvidia-container-cli
. - Fix an NVIDIA persistenced socket bind error with
--writable
. - Add detection of ceph to allow workarounds that avoid issues with sandboxes on ceph filesystems.
- Ensure setgid is inherited during make install.
- Ensure the root directory of a build has owner write permissions, regardless of the permissions in the bootstrap source.
- Fix a regression in
%post
and%test
to honor the-c
option. - Fix an issue running
%post
when a container doesn't have/etc/resolv.conf
or/etc/hosts
files. - Fix an issue with UID detection on RHEL6 when running instances.
- Fix a logic error when a sandbox image is in an overlay incompatible location, and both overlay and underlay are disabled globally.
- Fix an issue causing user namespace to always be used when
allow-setuid=no
was configured in a setuid installation. - Always allow key IDs and fingerprints to be specified with or without a
0x
prefix when usingsingularity keys
- Fix an issue preventing joining an instance started with
--boot
. - Provide a useful error message if an invalid library:// path is provided.
- Bring in multi-part upload client functionality that will address large image upload / proxied upload issues with a future update to Sylabs cloud.
In addition, numerous improvements have been made to the test suites, allowing them to pass cleanly on a range of kernel versions and distributions that are not covered by the open-source CI runs.
- 700 permissions are enforced on
$HOME/.singularity
andSINGULARITY_CACHEDIR
directories (CVE-2019-19724). Many thanks to Stuart Barkley for reporting this issue.
-
Fixes an issue preventing use of
.docker/config
for docker registry authentication. -
Fixes the
run-help
command in the unprivileged workflow. -
Fixes a regression in the
inspect
command to support older image formats. -
Adds a workaround for an EL6 kernel bug regarding shared bind mounts.
-
Fixes caching of http(s) sources with conflicting filenames.
-
Fixes a fakeroot sandbox build error on certain filesystems, e.g. lustre, GPFS.
-
Fixes a fakeroot build failure to a sandbox in $HOME.
-
Fixes a fakeroot build failure from a bad def file section script location.
-
Fixes container execution errors when CWD is a symlink.
-
Provides a useful warning r.e. possible fakeroot build issues when seccomp support is not available.
-
Fixes an issue where the
--disable-cache
option was not being honored. -
Deprecated
--groupid
flag forsign
andverify
; replaced with--group-id
. -
Removed useless flag
--url
forsign
.
A single feature has been added in the bugfix release, with specific functionality:
- A new option
allow container encrypted
can be set tono
insingularity.conf
to prevent execution of encrypted containers.
This point release addresses the following issues:
- Fixes a disk space leak when building from docker-archive.
- Makes container process SIGABRT return the expected code.
- Fixes the
inspect
command in unprivileged workflow. - Sets an appropriate default umask during build stages, to avoid issues with very restrictive user umasks.
- Fixes an issue with build script content being consumed from STDIN.
- Corrects the behaviour of underlay with non-empty / symlinked CWD and absolute symlink binds targets.
- Fixes execution of containers when binding BTRFS filesystems.
- Fixes build / check failures for MIPS & PPC64.
- Ensures file ownership maintained when building image from sandbox.
- Fixes a squashfs mount error on kernel 5.4.0 and above.
- Fixes an underlay fallback problem, which prevented use of sandboxes on lustre filesystems.
- New support for AMD GPUs via
--rocm
option added to bind ROCm devices and libraries into containers. - Plugins can now modify Singularity behaviour with two mutators: CLI and Runtime.
- Introduced the
config global
command to editsingularity.conf
settings from the CLI. - Introduced the
config fakeroot
command to setupsubuid
andsubgid
mappings for--fakeroot
from the Singularity CLI.
- Go 1.13 adopted.
- Vendored modules removed from the Git tree, will be included in release tarballs.
- Singularity will now fail with an error if a requested bind mount cannot be
made.
- This is beneficial to fail fast in workflows where a task may fail a long way downstream if a bind mount is unavailable.
- Any unavailable bind mount sources must be removed from
singularity.conf
.
- Docker/OCI image extraction now faithfully respects layer permissions.
- This may lead to sandboxes that cannot be removed without modifying permissions.
--fix-perms
option added to preserve old behaviour when building sandboxes.- Discussion issue for this change at: https://github.com/sylabs/singularity/issues/4671
Singularity>
prompt is always set when entering shell in a container.- The current
umask
will be honored when building a SIF file. instance exec
processes acquire cgroups set oninstance start
--fakeroot
supports uid/subgid ranges >65536singularity version
now reports semver compliant version information.
- Deprecated
--id
flag forsign
andverify
; replaced with--sif-id
.
- This point release addresses the following issues:
- Sets workable permissions on OCI -> sandbox rootless builds
- Fallback correctly to user namespace for non setuid installation
- Correctly handle the starter-suid binary for non-root installs
- Creates CACHEDIR if it doesn't exist
- Set apex loglevel for umoci to match singularity loglevel
- This point release addresses the following issues:
- Fixes an issue where a PID namespace was always being used
- Fixes compilation on non 64-bit architectures
- Allows fakeroot builds for zypper, pacstrap, and debootstrap
- Correctly detects seccomp on OpenSUSE
- Honors GO_MODFLAGS properly in the mconfig generated makefile
- Passes the Mac hostname to the VM in MacOS Singularity builds
- Handles temporary EAGAIN failures when setting up loop devices on recent kernels
- Fixes excessive memory usage in singularity push
- New support for building and running encrypted containers with RSA keys and
passphrases
--pem-path
option added to thebuild
and action commands for RSA based encrypted containers--passphrase
option added tobuild
and action commands for passphrase based encrypted containersSINGULARITY_ENCRYPTION_PEM_PATH
andSINGULARITY_ENCRYPTION_PASSPHRASE
environment variables added to serve same functions as above--encrypt
option added tobuild
command to build an encrypted container when environment variables contain a secret
- New
--disable-cache
flag prevents caching of downloaded containers - Added support for multi-line variables in singularity def-files
- Added support for 'indexed' def-file variables (like arrays)
- Added support for SUSE SLE Products
- Added the def-file variables: product, user, regcode, productpgp, registerurl, modules, otherurl (indexed)
- Support multiple-architecture tags in the SCS library
- Added a
--dry-run
flag tocache clean
- Added a
SINGULARITY_SYPGPDIR
environment variable to specify the location of PGP key data - Added a
--nonet
option to the action commands to disable networking when running with the--vm
option - Added a
--long-list
flag to thekey search
command to preserve - Added experimental, hidden
--fusemount
flag to pass a command to mount a libfuse3 based file system within the container
- Runtime now properly honors
SINGULARITY_DISABLE_CACHE
environment variable remote add
command now automatically attempts to login and a--no-login
flag is added to disable this behavior- Using the
pull
command to download an unsigned container no longer produces an error code cache clean
command now prompts user before cleaning when run without--force
option and is more verbose- Shortened the default output of the
key search
command
- The
--allow-unsigned
flag topull
has been deprecated and will be removed in the future
- Remote login and status commands will now use the default remote if a remote name is not supplied
- Added Singularity hub (
shub
) cache support when using thepull
command - Clean cache in a safer way by only deleting the cache subdirectories
- Improvements to the
cache clean
command
- new
oras
URI for pushing and pulling SIF files to and from supported OCI registries - added the
--fakeroot
option tobuild
,exec
,run
,shell
,test
, andinstance start
commands to run container in a new user namespace as uid 0 - added the
fakeroot
network type for use with the--network
option sif
command to allow for the inspection and manipulation of SIF files with the following subcommandsadd
Add a data object to a SIF filedel
Delete a specified object descriptor and data from SIF filedump
Extract and output data objects from SIF filesheader
Display SIF global headersinfo
Display detailed information of object descriptorslist
List object descriptors from SIF filesnew
Create a new empty SIF image filesetprim
Set primary system partition
- This point release fixes the following bugs:
- Allows users to join instances with non-suid workflow
- Removes false warning when seccomp is disabled on the host
- Fixes an issue in the terminal when piping output to commands
- Binds NVIDIA persistenced socket when
--nv
is invoked
- Instance files are now stored in user's home directory for privacy and many
checks have been added to ensure that a user can't manipulate files to change
starter-suid
behavior when instances are joined (many thanks to Matthias Gerstner from the SUSE security team for finding and securely reporting this vulnerability)
- Introduced a new basic framework for creating and managing plugins
- Added the ability to create containers through multi-stage builds
- Definitions now require
Bootstrap
be the first parameter of header
- Definitions now require
- Created the concept of a Sylabs Cloud "remote" endpoint and added the ability for users and admins to set them through CLI and conf files
- Added caching for images from Singularity Hub
- Made it possible to compile Singularity outside of
$GOPATH
- Added a json partition to SIF files for OCI configuration when building from an OCI source
- Full integration with Singularity desktop for MacOS code base
-
Introduced the
plugin
command group for creating and managing pluginscompile
Compile a singularity plugindisable
disable an installed singularity pluginenable
Enable an installed singularity plugininspect
Inspect a singularity plugin (either an installed one or an image)install
Install a singularity pluginlist
List installed singularity pluginsuninstall
Uninstall removes the named plugin from the system
-
Introduced the
remote
command group to support management of Singularity endpoints:add
Create a new Sylabs Cloud remote endpointlist
List all remote endpoints that are configuredlogin
Log into a remote endpoint using an authentication tokenremove
Remove an existing Sylabs Cloud remote endpointstatus
Check the status of the services at an endpointuse
Set a remote endpoint to be used by default
-
Added to the
key
command group to improve PGP key management:export
Export a public or private key into a specific fileimport
Import a local key into the local keyringremove
Remove a local public key
-
Added the
Stage: <name>
keyword to the definition file header and thefrom <stage name>
option/argument pair to the%files
section to support multistage builds
- The
--token/-t
option has been deprecated in favor of thesingularity remote
command group
- Ask to confirm password on a newly generated PGP key
- Prompt to push a key to the KeyStore when generated
- Refuse to push an unsigned container unless overridden with
--allow-unauthenticated/-U
option - Warn and prompt when pulling an unsigned container without the
--allow-unauthenticated/-U
option Bootstrap
must now be the first field of every header because of parser requirements for multi-stage builds
- New hidden
buildcfg
command to display compile-time parameters - Added support for
LDFLAGS
,CFLAGS
,CGO_
variables in build system - Added
--nocolor
flag to Singularity client to disable color in logging
singularity capability <add/drop> --desc
has been removedsingularity capability list <--all/--group/--user>
flags have all been removed
- The
--builder
flag to thebuild
command implicitly sets--remote
- Repeated binds no longer cause Singularity to exit and fail, just warn instead
- Corrected typos and improved docstrings throughout
- Removed warning when CWD does not exist on the host system
- Added support to spec file for RPM building on SLES 11
- Introduced the
oci
command group to support a new OCI compliant variant of the Singularity runtime:attach
Attach console to a running container processcreate
Create a container from a bundle directorydelete
Delete containerexec
Execute a command within containerkill
Kill a containermount
Mount create an OCI bundle from SIF imagepause
Suspends all processes inside the containerresume
Resumes all processes previously paused inside the containerrun
Create/start/attach/delete a container from a bundle directorystart
Start container processstate
Query state of a containerumount
Umount delete bundleupdate
Update container cgroups resources
- Added
cache
command group to inspect and manage cached filesclean
Clean your local Singularity cachelist
List your local Singularity cache
- Can now build CLI on darwin for limited functionality on Mac
- Added the
scratch
bootstrap agent to build from anything - Reintroduced support for zypper bootstrap agent
- Added the ability to overwrite a new
singularity.conf
when building from RPM if desired - Fixed several regressions and omissions in SCIF support
- Added caching for containers pulled/built from the Container Library
- Changed
keys
command group tokey
(retained hiddenkeys
command for backward compatibility) - Created an
RPMPREFIX
variable to allow RPMs to be installed in custom locations - Greatly expanded CI unit and end-to-end testing
- Bind paths in
singularity.conf
are properly parsed and applied at runtime - Singularity runtime will properly fail if
singularity.conf
file is not owned by the root user - Several improvements to RPM packaging including using golang from epel, improved support for Fedora, and avoiding overwriting conf file on new RPM install
- Unprivileged
--contain
option now properly mountsdevpts
on older kernels - Uppercase proxy environment variables are now rightly respected
- Add http/https protocols for singularity run/pull commands
- Update to SIF 1.0.2
- Add noPrompt parameter to
pkg/signing/Verify
function to enable silent verification
- Added the
--docker-login
flag to enable interactive authentication with docker registries - Added support for pulling directly from HTTP and HTTPS
- Made minor improvements to RPM packaging and added basic support for alpine packaging
- The
$SINGULARITY_NOHTTPS
,$SINGULARITY_TMPDIR
, and$SINGULARITY_DOCKER_USERNAME
/$SINGULARITY_DOCKER_PASSWORD
environment variables are now correctly respected - Pulling from a private shub registry now works as expected
- Running a container with
--network="none"
no longer incorrectly fails with an error message - Commands now correctly return 1 when incorrectly executed without arguments
- Progress bars no longer incorrectly display when running with
--quiet
or--silent
- Contents of
91-environment.sh
file are now displayed if appropriate when runninginspect --environment
- Improved RPM packaging procedure via makeit
- Enhanced general stability of runtime
- Singularity is now written primarily in Go to bring better integration with the existing container ecosystem
- Added support for new URIs (
build
&run/exec/shell/start
):library://
- Supports the Sylabs.io Cloud Librarydocker-daemon:
- Supports images managed by the locally running docker daemondocker-archive:
- Supports archived docker imagesoci:
- Supports oci imagesoci-archive:
- Supports archived oci images
- Handling of
docker
&oci
URIs/images now utilizes containers/image to parse and convert those image types in a supported way - Replaced
singularity instance.*
command group withsingularity instance *
- The command
singularity help
now only provides help regarding the usage of thesingularity
command. To display an image'shelp
message, usesingularity run-help <image path>
instead
- Removed deprecated
singularity image.*
command group - Removed deprecated
singularity create
command - Removed deprecated
singularity bootstrap
command - Removed deprecated
singularity mount
command - Removed deprecated
singularity check
command
- Added
singularity run-help <image path>
command to output an image'shelp
message - Added
singularity sign <image path>
command to allow a user to cryptographically sign a SIF image - Added
singularity verify <image path>
command to allow a user to verify a SIF image's cryptographic signatures - Added
singularity keys
command to allow the management ofOpenPGP
key stores - Added
singularity capability
command to allow fine grained control over the capabilities of running containers - Added
singularity push
command to push images to the Sylabs.io Cloud Library
- Added flags:
--add-caps <string>
: Run the contained process with the specified capability set (requires root)--allow-setuid
: Allows setuid binaries to be mounted into the container (requires root)--apply-cgroups <path>
: Apply cgroups configuration from file to contained processes (requires root)--dns <string>
: Adds the comma separated list of DNS servers to the containersresolv.conf
file--drop-caps <string>
: Drop the specified capabilities from the container (requires root)--fakeroot
: Run the container in a user namespace asuid=0
. Requires a recent kernel to function properly--hostname <string>
: Set the hostname of the container--keep-privs
: Keep root user privilege inside the container (requires root)--network <string>
: Specify a list of comma separated network types (CNI Plugins) to be present inside the container, each with its own dedicated interface in the container--network-args <string>
: Specify arguments to pass to CNI network plugins (set by--network
)--no-privs
: Drop all privileges from root user inside the container (requires root)--security <string>
: Configure security features such as SELinux, Apparmor, Seccomp...--writable-tmpfs
: Run container with atmpfs
overlay
- The command
singularity instance start
now supports the--boot
flag to boot the container via/sbin/init
- Changes to image mounting behavior:
- All image formats are mounted as read only by default
--writable
only works on images which can be mounted in read/write [applicable to:sandbox
and legacyext3
images]--writable-tmpfs
runs the container with a writabletmpfs
-based overlay [applicable to: all image formats]--overlay <string>
now specifies a list ofext3
/sandbox
images which are set as the containers overlay [applicable to: all image formats]
- All images are now built as Singularity Image Format (SIF) images by default
- When building to a path that already exists,
singularity build
will now prompt the user if they wish to overwrite the file existing at the specified location - The
-w|--writable
flag has been removed - The
-F|--force
flag now overrides the interactive prompt and will always attempt to overwrite the file existing at the specified location - The
-u|--update
flag has been added to support the workflow of running a definition file on top of an existing container [implies--sandbox
, only supportssandbox
image types] - The
singularity build
command now supports the following flags for integration with the Sylabs.io Cloud Library:-r|--remote
: Build the image remotely on the Sylabs Remote Builder (currently unavailable)-d|--detached
: Detach from thestdout
of the remote build [requires--remote
]--builder <string>
: Specifies the URL of the remote builder to access--library <string>
: Specifies the URL of the Sylabs.io Cloud Library to push the built image to when the build command destination is in the formlibrary://<reference>
- The
bootstrap
keyword in the definition file now supports the following values:library
docker-daemon
docker-archive
oci
oci-archive
- The
from
keyword in the definition file now correctly parses adocker
URI which includes theregistry
and/ornamespace
components - The
registry
andnamespace
keywords in the definition file are no longer supported. Instead, those values may all go into thefrom
keyword - Building from a tar archive of a
sandbox
no longer works