1.8.1

What's Changed

• added primer sets to help messages by @DataSpott in #249
• fixes #248

Full Changelog: 1.8.0...1.8.1

1.8.0

What's Changed

• [Feature] more info on Ns by @MarieLataretu in #243
• bumped predefined LCS table to 2023-01-26 by @MarieLataretu in #244
• [Feature] add ARTIC V5 and V5.1 by @MarieLataretu in #242
• [Bugfix] correction of VarSkip2b primer-scheme by @DataSpott , solving issue #246

Full Changelog: 1.7.2...1.8.0

1.7.2

What's Changed

• Split fasta improvement by @DataSpott in #239

Full Changelog: 1.7.1...1.7.2

addition of "VarSkipV2b" primer-set

• addition of "VarSkipV2b" primer-set by @bwlang

Full Changelog: 1.7.0...1.7.1

bumping up to nextclade 2

• bumping pangolin min container
• changed code to support nextclade 2 now and included the CLI changes

Full Changelog: 1.6.1...1.7.0

deactivate scorpio by default

• scorpio for lineage is deactivated by default (activate via --scorpio) as it overwrites some lineage assessments of BA.4 and BA.5

What's Changed

• added skip-scorpio parameter fixes #234 by @MarieLataretu in #235

Full Changelog: 1.6.0...1.6.1

1.6.0 publishing the vcf file and updates for the read lineage screen

What's Changed

• LCS UCSC marker update feature by @MarieLataretu in #231
• publish vcf file, fixes #232 by @MarieLataretu in #233

Full Changelog: 1.5.1...1.6.0

1.5.1

What's Changed

• Fixed an error with the pangolin-data version parsing, which prevented the final report-creation.

Full Changelog: 1.5.0...1.5.1

1.5.0

• included the new pangolin version 4 and some minor changes and adjustments

What's Changed

• Pangolin4 update by @RaverJay in #224
• Split LCS barplot by @MarieLataretu in #225
• other stuff @replikation in #228

Full Changelog: 1.4.1...1.5.0

1.4.1

What's Changed

• added bar plot for LCS by @MarieLataretu in #221
• fixing #223

Full Changelog: 1.4.0...1.4.1