From f613d87ac2799bee20cd8c83dd07d36fd884741e Mon Sep 17 00:00:00 2001
From: Mike Marquet <40232542+mult1fractal@users.noreply.github.com>
Date: Thu, 26 Jan 2023 12:07:52 +0100
Subject: [PATCH] Update Heatmap_table.Rmd
---
submodule_report/Heatmap_table.Rmd | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/submodule_report/Heatmap_table.Rmd b/submodule_report/Heatmap_table.Rmd
index 58812ed..fea6c14 100644
--- a/submodule_report/Heatmap_table.Rmd
+++ b/submodule_report/Heatmap_table.Rmd
@@ -94,8 +94,8 @@ div.blue { background-color:#e6f0ff; border-radius: 5px; padding: 20px;}
# Open your Linux-Terminal
mkdir contigs_of_interest
cd contigs_of_interest
-# Copy the downloaded Phage prediction by contig table to the contig_IDs_of_interest -folder
-# Copy the input_fasta to the contig_IDs_of_interest -folder
+# Copy the downloaded Phage prediction by contig table to the contigs_of_interest -folder
+# Copy the input_fasta to the contigs_of_interest -folder
cp WtP_results/your_sample/Input_fasta/your_input_fasta.fa.gz /foo/bar/contigs_of_interest
# Get contig IDs of interest
tail -n+2 final_report.utf8.csv | tr -d '"' | cut -f2 -d"," > contig_IDs_of_interest.txt
@@ -110,4 +110,4 @@ seqkit grep --pattern-file contig_IDs_of_interest.txt your_input_fasta.fa.gz > c
-Back to top
\ No newline at end of file
+Back to top