From a29c0e643c7ae84af7de3e912dc7564d46f2d9d4 Mon Sep 17 00:00:00 2001
From: papanikos <nikos.c.pappas@gmail.com>
Date: Tue, 30 Mar 2021 14:12:09 +0200
Subject: [PATCH] split vs2 db download to separate module

---
 modules/databases/virsorter2_download_DB.nf | 15 +++++++++++++++
 1 file changed, 15 insertions(+)
 create mode 100644 modules/databases/virsorter2_download_DB.nf

diff --git a/modules/databases/virsorter2_download_DB.nf b/modules/databases/virsorter2_download_DB.nf
new file mode 100644
index 0000000..7a37db4
--- /dev/null
+++ b/modules/databases/virsorter2_download_DB.nf
@@ -0,0 +1,15 @@
+process download_virsorter2_DB {
+    label 'noDocker'    
+    if (params.cloudProcess) { publishDir "${params.databases}/virsorter2-db", mode: 'copy' }
+    else { storeDir "${params.databases}/virsorter2-db" }  
+    output:
+        path("virsorter2-db", type: 'dir')
+    script:
+        """
+        wget https://osf.io/v46sc/download -O db.tgz
+        mkdir virsorter2-db
+        tar -zxvf db.tgz virsorter2-db --strip-components=1 -C virsorter2-db
+        chmod a+rX virsorter2-db
+        rm -f db.tgz
+        """
+}