From 3a301702a8ccb3feab4c016612c4e75296e1b06f Mon Sep 17 00:00:00 2001
From: Christian Brandt <35726766+replikation@users.noreply.github.com>
Date: Thu, 10 Sep 2020 17:52:21 +0200
Subject: [PATCH] Update setup_container.nf

---
 modules/setup_container.nf | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/modules/setup_container.nf b/modules/setup_container.nf
index beb2170..ba24b0c 100644
--- a/modules/setup_container.nf
+++ b/modules/setup_container.nf
@@ -16,8 +16,10 @@ process setup_container {
         else if (workflow.profile.contains('singularity'))
         """
         if  [[ ${params.cachedir} = /* ]] ; then
+                mkdir -p ${params.cachedir} 
                 download_singularity.sh ${config_file} ${params.cachedir} 
         else
+                mkdir -p ${workflow.launchDir}/${params.cachedir} 
                 download_singularity.sh ${config_file} ${workflow.launchDir}/${params.cachedir} 
         fi