diff --git a/submodule_report/Heatmap_table.Rmd b/submodule_report/Heatmap_table.Rmd index 58812ed..4712a42 100644 --- a/submodule_report/Heatmap_table.Rmd +++ b/submodule_report/Heatmap_table.Rmd @@ -66,7 +66,7 @@ The tool's output and what WtP assigns are shown in the table below. Tool | Standard output | WtP displayed value | F1 scores by Ho et al. |-|-|-|-| -|deepvirfinder | p-value: 0 to 1 | 0 to 1 | >0.83 +|deepvirfinder | score: 0 to 1 | 0 to 1 | >0.83 |metaphinder | string: phage | 1 | >0.83 |metaphinder own| string: phage | 1 | N/A |phigaro | score: 0 to 1 | 0 to 1 | N/A @@ -75,7 +75,7 @@ Tool | Standard output | WtP displayed value | F1 |sourmash | similarity: 0 to 1 | 0 to 1 | N/A |vibrant | prediction: virus | 1 | >0.83 |vibrant-virome | prediction: virus | 1 | N/A -|virfinder | p-value: 0 to 1 | 0 to 1 | >0.83 +|virfinder | score: 0 to 1 | 0 to 1 | >0.83 |virnet | score: 0 to 1 | 0 to 1 | N/A |virsorter | category 1, category 2, category 3 | 1, 0.5, 0 | >0.83 |virsorter-virome|category 1, category 2, category 3 | 1, 0.5, 0 | N/A diff --git a/workflows/process/sourmash/download_references.nf b/workflows/process/sourmash/download_references.nf index b930384..7230cc7 100644 --- a/workflows/process/sourmash/download_references.nf +++ b/workflows/process/sourmash/download_references.nf @@ -18,8 +18,7 @@ process download_references { wget --no-check-certificate https://osf.io/6ukfx/download -O references.tar.gz tar -xvzf references.tar.gz mv references/*.fa . - rm -r references - references.tar.gz + rm -r references.tar.gz """ stub: """