Python implementation of Automated Lesion and Feature Extraction (pyALFE) pipeline. We developed this pipeline for analysis of brain MRIs of patients suffering from conditions that cause brain lesions. It utilizes image processing tools, image registration tools, and deep learning segmentation models to produce a set of features that describe the lesions in the brain.
Details about installation and usage can be found at: https://reghbali.github.io/pyalfe
To get started, you can go through this tutorial: https://reghbali.github.io/pyalfe/guides/tutorial.html
Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.
Please make sure to update tests as appropriate.
BSD 3-Clause