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HISTORY.txt
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HISTORY.txt
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# RCSB_UTILS_STRUCT HISTORY
3-Apr-2019 - V0.10 Package created
5-Apr-2019 - V0.11 Incorporated SCOPe and CATH utilities and tests
6-Apr-2019 - V0.12 Deliver explicit residue ranges
10-Apr-2019 - V0.13 Simplify SCOP parent tree to named nodes, add sccs to data payload
16-Apr-2019 V0.14 Cast all types in tree node lists to string and remove lineage
17-Apr-2019 V0.15 Adjust parent node attributes
24-Apr-2019 V0.16 Exclude synthetic SCOP root node from export tree node list
22-Jun-2019 V0.17 Update development workflow
13-Jun-2019 V0.18 Improve Py27 character encoding compatibility
14-Aug-2019 V0.19 Adjust cache management
29-Aug-2019 V0.20 Add ScopClassificationProvider() and CathClassificationProvider()
23-Nov-2019 V0.21 Move pipeline to py38
10-Jan-2020 V0.22 Add fallback data source targets for CATH
28-Jan-2020 V0.23 Increment the SCOPe version
3-Feb-2020 V0.24 Update dependencies
25-Jun-2020 V0.25 Increment the SCOPe version
15-Aug-2020 V0.26 Add failover backup for CATH cache data
28-Mar-2021 V0.27 Update dependencies and CI pipeline
4-May-2021 V0.28 Add fallback options for ScopClassificationProvider()
7-May-2021 V0.29 Update SCOP version
10-Jul-2021 V0.30 Add SCOP2/B and ECOD provider modules and associated tests
13-Jul-2021 V0.31 Adjust returned values in get range methods for SCOP2/B and ECOD
15-Jul-2021 V0.32 Unify on the common provider constructor API, make providers a subclass of rcsb.utils.io.StashableBase
3-Aug-2021 V0.33 Handle ECOD root id in getIdLineage()
4-Aug-2021 V0.34 Assign synthetic names to unnamed SCOP2 domains
21-Aug-2021 V0.35 Update dependencies and pipeline files
23-Aug-2021 V0.36 Adjustments to ECOD lineage construction for unnamed nodes
10-Sep-2021 V0.37 Separate protein type and structural class in tree representation.
22-Sep-2021 V0.38 Add module EntryInfoProvider and associated tests (accessor methods only)
23-Sep-2021 V0.39 Update SCOP version and path details
16-Nov-2021 V0.40 Append additional ECOD annotations for given entryId and chainId instead of overwriting
24-Feb-2022 V0.41 Resolve duplication issues with Scop2 tree node list, and fix parent ID lists for nodes with multiple parents
9-Mar-2022 V0.42 Fix issue related to V0.41 update to Scop2 provider
6-Jan-2023 V0.43 Configuration changes to support tox 4
18-Apr-2023 V0.44 Fix Ecod and Scop2 provider fall-back file import
18-Jul-2023 V0.45 Resolve duplication issues with Scop2 families and CATH residue range lists
24-Apr-2024 V0.46 Turn off fetching of source SCOP2/SCOP2B data following shutdown of host website; rely on latest fallback instead
9-May-2024 V0.47 Tweak to above update (V0.46); update setuptools config
10-Jun-2024 V0.48 Update SCOP2 source to new website, and restructure SCOP2 data reloading/building steps
9-Dec-2024 V0.49 Update Azure pipelines to use latest macOS, Ubuntu, and python 3.10