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DESCRIPTION
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DESCRIPTION
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Package: GenomicScores
Type: Package
Title: Infrastructure to work with genomewide position-specific scores
Description: Provide infrastructure to store and access genomewide
position-specific scores within R and Bioconductor.
Version: 2.17.0
Authors@R: c(person("Robert", "Castelo", role=c("aut", "cre"),
email="[email protected]"), person("Pau", "Puigdevall",
role="ctb", email="[email protected]"), person("Pablo",
"Rodríguez", role="ctb", email="[email protected]"))
License: Artistic-2.0
Depends: R (>= 3.5), S4Vectors (>= 0.7.21), GenomicRanges, methods,
BiocGenerics (>= 0.13.8)
Imports: stats, utils, XML, httr, Biobase, BiocManager, BiocFileCache,
IRanges (>= 2.3.23), Biostrings, GenomeInfoDb, AnnotationHub,
rhdf5, DelayedArray, HDF5Array
Suggests: RUnit, BiocStyle, knitr, rmarkdown, VariantAnnotation,
gwascat, RColorBrewer, shiny, shinyjs, shinycustomloader, data.table,
DT, magrittr, shinydashboard, BSgenome.Hsapiens.UCSC.hg38,
phastCons100way.UCSC.hg38, MafDb.1Kgenomes.phase1.hs37d5,
MafH5.gnomAD.v4.0.GRCh38, SNPlocs.Hsapiens.dbSNP144.GRCh37,
TxDb.Hsapiens.UCSC.hg38.knownGene
VignetteBuilder: knitr
URL: https://github.com/rcastelo/GenomicScores
BugReports: https://github.com/rcastelo/GenomicScores/issues
Encoding: UTF-8
biocViews: Infrastructure, Genetics, Annotation, Sequencing, Coverage, AnnotationHubSoftware