You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
for sequences with lengths over 64 characters it would still be possible to calculate the similarity for multiple sequences in parallel using simd. However for very long sequences it might be faster to compare individual sequences especially when a score_cutoff is specified
The text was updated successfully, but these errors were encountered:
depending on the metric it can be hard to implement, since the algorithms behavior depends on the individual string lengths
many of the algorithms use ukkonen bands to improve the runtime when the user provides a score_cutoff. Since the ukkonen bands depend on the string lengths it's not really possible to use both of them. Depending on the user provided score cutoff, this can provide a much larger speedup.
for sequences with lengths over 64 characters it would still be possible to calculate the similarity for multiple sequences in parallel using simd. However for very long sequences it might be faster to compare individual sequences especially when a
score_cutoff
is specifiedThe text was updated successfully, but these errors were encountered: