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DOCUMENTATION: Default blastn settings are not indicated #25

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boasvdp opened this issue Jul 26, 2020 · 1 comment
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DOCUMENTATION: Default blastn settings are not indicated #25

boasvdp opened this issue Jul 26, 2020 · 1 comment

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@boasvdp
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boasvdp commented Jul 26, 2020

CPgeneProfiler currently only looks for exact matches of CP genes (100% nucleotide identity, 100% coverage), which is not clear from the documentation.
@boasvdp boasvdp mentioned this issue Jul 26, 2020
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@ramadatta
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ramadatta commented Sep 29, 2020 •
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We agree with the reviewer. The default parameters are mentioned in the documentation now. Users can now tweak the alignment coverage and percentage identity parameters while running filt_blast and cocarriage commands. Please find the details in the example usage section.

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@ramadatta @boasvdp