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Next-Gen Sequence Analysis Workshop (2019)

These are the schedule and classroom materials for the ANGUS workshop at UC Davis, which will run from July 1st to July 13th, 2019. ANGUS is part of the 2019 Data Intensive Biology Summer Institute.

This workshop runs under a Code of Conduct. Please respect it and be excellent to each other!

We hope that we can respect each other by following these guidelines & expectations.

Please submit your feedback here on any aspect of the workshop. We encourage feedback from everyone involved in the workshop in any capacity

Twitter hash tag: #dibsi2019

3 Rooms & lead instructors!

Room Mexía will be led by Rocio Martinez-Nunez and Taylor Reiter, in 1043 Valley.

Room Lovelace will enjoy the leadership of Chissa Rivaldi and Mike Lee, in 1041 Valley.

Room Conway will be led by Sateesh Peri & Marian Schmidt, in 2020 Valley.

Schedule, in brief:

Monday, July 1st, 2019:

Tuesday, July 2nd, 2019:

Wednesday, July 3rd, 2019:

Thursday, July 4th, 2019

Friday, July 5th, 2019

Second week: July 8-13, 2019.

Monday, July 8th, 2019

Tuesday, July 9th, 2019

Wednesday, July 10th, 2019

Thursday, July 11th, 2019

  • 9:00-10:20am: Elective Lab: (1) Intro to Git & (2) BYOD
    • 10:20-10:40am: BREAK
  • 10:40am-12:00pm: Elective Lab: (1) Intro to Git (continued) & (2) BYOD
    • 12:00-1:00pm: LUNCH
  • 1:00-2:00pm: Phillip Brooks - Cloud platforms & Seven Bridges
    • 2:00-2:10pm: BREAK
  • 2:15-3:30pm: Elective Lab: (1) Microbial Ecology & (2) BYOD
    • 3:30-3:50pm: BREAK
  • 3:50-5:00pm: Elective Lab: Quick Insights from Sequencing Data with Sourmash & (2) BYOD
    • 5:00pm: DONE

Friday, July 12th, 2019

  • 9:00-10:20am: Elective Lab: (1) Metagenome Assembled Genomes (MAGs) & (2) RNAseq in R & (3) BYOD
    • 10:20-10:40am: BREAK
  • 10:40am-12:00pm: Elective Lab: (1) Metagenome Assembled Genomes (MAGs) & (2) RNAseq in R & (3) BYOD
    • 12:00-1:00pm: LUNCH
  • 1:00-2:00pm: Rocio Martinez-Nunez - What comes after ANGUS?
    • 2:00-2:10pm: BREAK
  • 2:15-3:30pm: Elective Labs & BYOD (more info soon)
    • 3:30-3:50pm: BREAK
  • 3:50-5:00pm: Elective Labs & BYOD (more info soon)
    • 5:00pm: DONE

Saturday, July 13th, 2019

(check out of your rooms and bring luggage over. Please be sure to bring your computer!)

  • 9:00-9:30am: XSEDE Resources with Sateesh Peri
  • 9:30-10:20am: Closing thoughts by Mike Lee
    • 10:20am-10:40am: BREAK
  • 11:30am-12:00pm: Assessment & Final Perspective
    • 12:00pm: THANK YOU & HAPPY TRAVELS!