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Added create_fishery_subset. The sampling functions will take care of the observation error. This function simply subsets the data by specific polygons that are assumed to be sampled.
I'm not sure of the format of the catch from run_atlantis. Is a matrix with species, age, polygon, layer, time, and numbersAtAge available for the fishery catch?
The function
create_fisherydata
is being created and will be based oncreate_survey
but without a catchability parameter.The text was updated successfully, but these errors were encountered: