atlantisom

Atlantis operating model. Generates data sets from Atlantis scenarios.

Installing the atlantisom R package

You must install from github, using:

# install.packages("devtools")
devtools::install_github("r4atlantis/atlantisom")

atlantisom functions are divided into four types:

load functions that read in output from Atlantis.
create functions that conduct run multiple sample functions to create either fishery-independent or fishery-dependent data.
sample functions for manipulate Atlantis data which signifies the truth. These manipulations generate sampled data for use in various estimation models.
write functions for writing output the disk.