load_all() errors when some packages need to be installed.

[olivroy]

It happened a couple times. It happened when I forked https://github.com/ProjectMOSAIC/mosaic
with usethis::create_from_github("ProjectMOSAIC/mosaic") and then usethis::pr_init("branch") + load_all().

I have library(devtools) loaded if that helps. and had to use setwd() as the package had some weird .Rproj file. But it is unrelated. It happened to me before. Related to #184

I don't really know what may be causing this.

> devtools::load_all("~/rrr-forks/mosaic")
ℹ Loading mosaic
ℹ The packages "ggformula", "mosaicData", and "mosaicCore" (>= 0.7.0) are required.
✖ Would you like to install them?

1: Yes
2: No

Sélection : 1
Error: 
! error in pak subprocess
Caused by error in `get_remote_types(refs)`:
! Cannot parse package: ~/rrr-forks/mosaic.
ℹ See `?pkgdepends::pkg_refs()` for supported package sources.
Type .Last.error to see the more details.
> .Last.error.trace
1. devtools::load_all("~/rrr-forks/mosaic")
2. pkgload::load_all(path = path, reset = reset, recompile = recompile, …
3. pkgload:::load_imports(path)
4. pkgload:::deps_check_installed(path, imports)
5. rlang::check_installed(pkg, action = action, call = call)
6. local action(missing_pkgs)
7. pak::pkg_deps(path, upgrade = FALSE)
8. pak:::remote(function(...) { …
9. err$throw(res$error)

Session Info

> sessioninfo::session_info()
─ Session info ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.3.1 (2023-06-16 ucrt)
 os       Windows 10 x64 (build 19044)
 system   x86_64, mingw32
 ui       RStudio
 language (EN)
 collate  French_Canada.utf8
 ctype    French_Canada.utf8
 tz       America/Toronto
 date     2023-10-12
 rstudio  2023.09.0-daily+401 Desert Sunflower (desktop)
 pandoc   3.1.1 @ ~/AppData/Local/Programs/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)

─ Packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ! package         * version    date (UTC) lib source
   askpass           1.2.0      2023-09-03 [1] CRAN (R 4.3.1)
   base64enc         0.1-3      2015-07-28 [1] CRAN (R 4.3.0)
   brio              1.1.3      2021-11-30 [1] CRAN (R 4.3.0)
   cachem            1.0.8      2023-05-01 [1] CRAN (R 4.3.0)
   callr             3.7.3      2022-11-02 [1] CRAN (R 4.3.0)
   class             7.3-22     2023-05-03 [2] CRAN (R 4.3.1)
   classInt          0.4-10     2023-09-05 [1] CRAN (R 4.3.1)
   cli               3.6.1      2023-03-23 [1] CRAN (R 4.3.0)
   colorspace        2.1-0      2023-01-23 [1] CRAN (R 4.3.0)
   crayon            1.5.2      2022-09-29 [1] CRAN (R 4.3.0)
   credentials       2.0.1      2023-09-06 [1] CRAN (R 4.3.1)
   curl              5.1.0      2023-10-02 [1] CRAN (R 4.3.1)
   DBI               1.1.3      2022-06-18 [1] CRAN (R 4.3.0)
   desc              1.4.2      2022-09-08 [1] CRAN (R 4.3.0)
   devtools        * 2.4.5      2022-10-11 [1] CRAN (R 4.3.0)
   digest            0.6.33     2023-07-07 [1] CRAN (R 4.3.1)
   dplyr             1.1.3      2023-09-03 [1] CRAN (R 4.3.1)
   e1071             1.7-13     2023-02-01 [1] CRAN (R 4.3.0)
   ellipsis          0.3.2      2021-04-29 [1] CRAN (R 4.3.0)
   evaluate          0.22       2023-09-29 [1] CRAN (R 4.3.1)
   fansi             1.0.5      2023-10-08 [1] CRAN (R 4.3.1)
   fastmap           1.1.1      2023-02-24 [1] CRAN (R 4.3.0)
   fs                1.6.3      2023-07-20 [1] CRAN (R 4.3.1)
   generics          0.1.3      2022-07-05 [1] CRAN (R 4.3.0)
   gert              2.0.0      2023-09-26 [1] CRAN (R 4.3.1)
   ggplot2           3.4.3.9000 2023-10-05 [1] Github (tidyverse/ggplot2@8835709)
   gh                1.4.0      2023-02-22 [1] CRAN (R 4.3.0)
   gitcreds          0.1.2      2022-09-08 [1] CRAN (R 4.3.0)
   glue              1.6.2      2022-02-24 [1] CRAN (R 4.3.0)
   gt                0.10.0     2023-10-07 [1] CRAN (R 4.3.1)
   gtable            0.3.4      2023-08-21 [1] CRAN (R 4.3.1)
   htmltools         0.5.6.1    2023-10-06 [1] CRAN (R 4.3.1)
   htmlwidgets       1.6.2      2023-03-17 [1] CRAN (R 4.3.0)
   httpuv            1.6.11     2023-05-11 [1] CRAN (R 4.3.1)
   httr2             0.2.3      2023-05-08 [1] CRAN (R 4.3.0)
   janitor           2.2.0.9000 2023-08-10 [1] https://sfirke.r-universe.dev (R 4.3.1)
   jsonlite          1.8.7      2023-06-29 [1] CRAN (R 4.3.1)
   KernSmooth        2.23-22    2023-07-10 [1] CRAN (R 4.3.1)
   kit               0.0.15     2023-10-01 [1] CRAN (R 4.3.1)
   knitr             1.44       2023-09-11 [1] CRAN (R 4.3.1)
   later             1.3.1      2023-05-02 [1] CRAN (R 4.3.0)
   lattice           0.21-8     2023-04-05 [2] CRAN (R 4.3.1)
   lifecycle         1.0.3      2022-10-07 [1] CRAN (R 4.3.0)
   lubridate         1.9.3      2023-09-27 [1] CRAN (R 4.3.1)
   magrittr          2.0.3      2022-03-30 [1] CRAN (R 4.3.0)
   MASS              7.3-60     2023-05-04 [2] CRAN (R 4.3.1)
   Matrix            1.6-1.1    2023-09-18 [1] CRAN (R 4.3.1)
   memoise           2.0.1      2021-11-26 [1] CRAN (R 4.3.0)
   mime              0.12       2021-09-28 [1] CRAN (R 4.3.0)
   miniUI            0.1.1.1    2018-05-18 [1] CRAN (R 4.3.0)
 R mosaic            1.8.4.4    <NA>       [?] <NA>
 R mosaicIncubator   1.0        <NA>       [?] <NA>
   munsell           0.5.0      2018-06-12 [1] CRAN (R 4.3.0)
   openssl           2.1.1      2023-09-25 [1] CRAN (R 4.3.1)
   pak               0.6.0      2023-08-31 [1] local
   pillar            1.9.0      2023-03-22 [1] CRAN (R 4.3.0)
   pkgbuild          1.4.2      2023-06-26 [1] CRAN (R 4.3.1)
   pkgconfig         2.0.3      2019-09-22 [1] CRAN (R 4.3.0)
   pkgdown           2.0.7      2022-12-14 [1] CRAN (R 4.3.0)
   pkgload           1.3.3      2023-09-22 [1] CRAN (R 4.3.1)
   prettyunits       1.2.0      2023-09-24 [1] CRAN (R 4.3.1)
   processx          3.8.2      2023-06-30 [1] CRAN (R 4.3.1)
   profvis           0.3.8      2023-05-02 [1] CRAN (R 4.3.0)
   promises          1.2.1      2023-08-10 [1] CRAN (R 4.3.1)
   proxy             0.4-27     2022-06-09 [1] CRAN (R 4.3.0)
   ps                1.7.5      2023-04-18 [1] CRAN (R 4.3.0)
   purrr             1.0.2      2023-08-10 [1] CRAN (R 4.3.1)
   quarto            1.3        2023-09-19 [1] CRAN (R 4.3.1)
   R6                2.5.1      2021-08-19 [1] CRAN (R 4.3.0)
   rappdirs          0.3.3      2021-01-31 [1] CRAN (R 4.3.0)
   Rcpp              1.0.11     2023-07-06 [1] CRAN (R 4.3.1)
   remotes           2.4.2.1    2023-07-18 [1] CRAN (R 4.3.1)
   repr              1.1.6      2023-01-26 [1] CRAN (R 4.3.0)
   reuseme         * 0.0.0.9005 2023-09-29 [1] local
   rlang             1.1.1      2023-04-28 [1] CRAN (R 4.3.0)
   rmarkdown         2.25       2023-09-18 [1] CRAN (R 4.3.1)
   rprojroot         2.0.3      2022-04-02 [1] CRAN (R 4.3.0)
   rstudioapi        0.15.0     2023-07-07 [1] CRAN (R 4.3.1)
   scales            1.2.1      2022-08-20 [1] CRAN (R 4.3.0)
   sessioninfo       1.2.2      2021-12-06 [1] CRAN (R 4.3.0)
   sf                1.0-14     2023-07-11 [1] CRAN (R 4.3.1)
   shiny             1.7.5      2023-08-12 [1] CRAN (R 4.3.1)
   skimr             2.1.5      2022-12-23 [1] CRAN (R 4.3.0)
   snakecase         0.11.1     2023-08-27 [1] CRAN (R 4.3.1)
   stringi           1.7.12     2023-01-11 [1] CRAN (R 4.3.0)
   stringr           1.5.0      2022-12-02 [1] CRAN (R 4.3.0)
   sys               3.4.2      2023-05-23 [1] CRAN (R 4.3.1)
   testthat          3.2.0      2023-10-06 [1] CRAN (R 4.3.1)
   tibble            3.2.1      2023-03-20 [1] CRAN (R 4.3.0)
   tidyr             1.3.0      2023-01-24 [1] CRAN (R 4.3.0)
   tidyselect        1.2.0      2022-10-10 [1] CRAN (R 4.3.0)
   tidyverse         2.0.0      2023-02-22 [1] CRAN (R 4.3.0)
   timechange        0.2.0      2023-01-11 [1] CRAN (R 4.3.0)
   units             0.8-4      2023-09-13 [1] CRAN (R 4.3.1)
   urlchecker        1.0.1      2021-11-30 [1] CRAN (R 4.3.0)
   usethis         * 2.2.2      2023-07-06 [1] CRAN (R 4.3.1)
   utf8              1.2.3      2023-01-31 [1] CRAN (R 4.3.0)
   vctrs             0.6.3      2023-06-14 [1] CRAN (R 4.3.1)
   withr             2.5.1      2023-09-26 [1] CRAN (R 4.3.1)
   xfun              0.40       2023-08-09 [1] CRAN (R 4.3.1)
   xml2              1.3.5      2023-07-06 [1] CRAN (R 4.3.1)
   xtable            1.8-4      2019-04-21 [1] CRAN (R 4.3.0)
   yaml              2.3.7      2023-01-23 [1] CRAN (R 4.3.0)

 [1] ~/AppData/Local/R/win-library/4.3
 [2] C:/Program Files/R/R-4.3.1/library

 R ── Package was removed from disk.

(some paths wiped)

[lionel-]

Do you get the same error if you run pak::pak("~/rrr-forks/mosaic")? If so that's either an issue with your package or with pak, in which case we should move the issue there.

[olivroy]

I am pretty sure it would be an issue with pak then. because the prompt is very handy when you do load_all(), it just sometimes doesn't work, and I can't explain why..

maybe it happens only when you don't have the package forked already installed, this happens. If you look at the session info, it says "Package removed from disk"

[olivroy]

@lionel- , I figured it out.

deps <- pak::pkg_deps(path, upgrade = FALSE)

pak::pkg_deps() does not accept a full path.

pkgload (or devtools?) normalizes the path. So even if I call devtools::load_all(".") at the stage of deps_check_installed(), path was expanded to the full path C:/users/path/to/package

I think it could be replaced by pak::local_deps().

Otherwise, would require pak::pkg_deps() to accept a full path, but its documentation does not suggest it can handle a full path.