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Pando output - enhancer regions #63

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valentinaOpazo opened this issue Apr 22, 2024 · 0 comments
Open

Pando output - enhancer regions #63

valentinaOpazo opened this issue Apr 22, 2024 · 0 comments

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@valentinaOpazo
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Hi, thank you for this useful package! I
I ran Pando with my data and I got a SeuratPlus object. Now I would like to explore the regions with high chromatin accessibility (regions with many peaks) and that the TFs that bind to this region have a positive relation with their target gene (that potentially could represent an enhancer region). Do you know how can I extract this information from the SeuratPlust object? I think that maybe could be the information in PandoObject@grn@regions@motifs@data or PandoObject@grn@regions@motifs@positions but I'm not sure.

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