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the result file foo_indexed_CDR3s.csv #66

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shwdmsh opened this issue Jul 22, 2021 · 1 comment
Open

the result file foo_indexed_CDR3s.csv #66

shwdmsh opened this issue Jul 22, 2021 · 1 comment
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@shwdmsh
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shwdmsh commented Jul 22, 2021

Hi,when I used the align command as follows(using the demo data murugan_naive1_noncoding_demo_seqs.txt):
igor -set_wd $WDPATH -batch foo -species human -chain beta -align --all
Then I got the result foo_indexed_CDR3s.csv,However the context in file as follows:

seq_index;v_anchor;j_anchor;CDR3nt;CDR3aa
0;0;0;;
0;0;0;;
0;0;0;;
0;0;0;;
0;0;0;;
0;0;0;;
0;0;0;;
0;0;0;;
0;0;0;;

Is the result correct ? If not, how to do ?
Waiting for your help!

@ArteEfs
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ArteEfs commented Jan 25, 2024

Hi,
I am currently facing the same problem. Any chance you've managed to fix it?
Would be very grateful for any tips.
Kind regards

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