20_python_data_intro.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {
    "nbpresent": {
     "id": "dc7a1635-0bbd-4bf7-a07e-7a36f58e258b"
    },
    "slideshow": {
     "slide_type": "slide"
    }
   },
   "source": [
    "# Data science in Python\n",
    "\n",
    "<center><img src=\"https://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Python-logo-notext.svg/240px-Python-logo-notext.svg.png\" /></center>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "slideshow": {
     "slide_type": "slide"
    }
   },
   "source": [
    "## Aims\n",
    "\n",
    "This course will cover concepts and strategies for working with data **more effectively** in Python with the aim of: \n",
    "\n",
    "- Writing **reusable** code, using **functions** and **libraries**\n",
    "- Acquiring a working knowledge of **key concepts** which are prerequisites for advanced programming in Python like writing classes to build objects\n",
    "- During this course you will learn about:\n",
    "    - Manipulating data using Pandas\n",
    "    - Visualising data with Matplotlib \n",
    "    - Working with biological data using BioPython"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "nbpresent": {
     "id": "21082cb9-e1b9-4fe9-80d5-9d9e8418937b"
    },
    "slideshow": {
     "slide_type": "slide"
    }
   },
   "source": [
    "## Learning objectives\n",
    "- **Use** third-party Python libraries: Pandas, Matplotlib & BioPython\n",
    "- **Solve** more complex exercises using these concepts"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "nbpresent": {
     "id": "ceb5f5a0-a5e8-435e-ae16-23c2ba8c6ab2"
    },
    "slideshow": {
     "slide_type": "slide"
    }
   },
   "source": [
    "## Course schedule - day 2\n",
    "\n",
    "\n",
    "- 09:30-09:45: [0:15] **Introduction**\n",
    "- 09:45-11:00: [1:15] **Session 2.1** - Manipulating data with Pandas\n",
    "- 11:00-11:15: [0:15] *break*\n",
    "- 11:15-12:30: [1:15] **Session 2.2** - Visualising data with Matplotlib\n",
    "- 12:30-13:30: [1:00] *lunch break*\n",
    "- 13:30-14:45: [1:15] **Session 2.3** - Working with biological data using BioPython\n",
    "- 14:45-15:00: [0:15] *break*\n",
    "- 15:00-16:15: [1:15] **Session 2.4** - Creating a data project report using Jupyter\n",
    "- 16:15-16:30: [0:15] **Conclusion**"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "nbpresent": {
     "id": "8458de53-35b5-405e-a372-5db5d2e2c2c5"
    },
    "slideshow": {
     "slide_type": "slide"
    }
   },
   "source": [
    "## Course materials\n",
    "\n",
    "- The course materials is accessible on GitHub:\n",
    "    - https://github.com/pycam/python-data-science\n",
    "- We’d like you to follow along with the example code as we go through the material, and attempt the exercises to practice what you’ve learned\n",
    "- If you have specific projects/problems that you think could be attempted using Python, we are happy to (try to) help during the exercises. Just let us know!"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Feedback\n",
    "\n",
    "- Questions are welcome at any point!\n",
    "- We use a two colour post-it system: \n",
    "  - **green** when exercise is done; and \n",
    "  - **red/pink** when you need help"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "nbpresent": {
     "id": "0e25dad3-add0-466e-8f71-e771d6ec4500"
    },
    "slideshow": {
     "slide_type": "slide"
    }
   },
   "source": [
    "## Next session\n",
    "\n",
    "Go to our next notebook: [Session 2.1: Data manipulation with Pandas](21_python_data.ipynb)"
   ]
  }
 ],
 "metadata": {
  "anaconda-cloud": {},
  "celltoolbar": "Slideshow",
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.6.4"
  },
  "nbpresent": {
   "slides": {
    "152c5a3b-78f9-4183-bce2-379a4012baf6": {
     "id": "152c5a3b-78f9-4183-bce2-379a4012baf6",
     "layout": "grid",
     "prev": "5613e857-5b4e-42e4-9feb-df0440592ca2",
     "regions": {
      "20d6059c-7745-410d-a5fb-0b91cacbc2e2": {
       "attrs": {
        "height": 0.6666666666666666,
        "pad": 0.01,
        "treemap:weight": 1,
        "width": 0.5,
        "x": 0,
        "y": 0
       },
       "id": "20d6059c-7745-410d-a5fb-0b91cacbc2e2"
      },
      "300e6ccd-ecf4-425e-8574-3debe305aafb": {
       "attrs": {
        "height": 0.3333333333333333,
        "pad": 0.01,
        "treemap:weight": 1,
        "width": 1,
        "x": 0,
        "y": 0.6666666666666666
       },
       "content": {
        "cell": "9814e8d7-60e0-43e6-aee0-3c33cc2cc809",
        "part": "whole"
       },
       "id": "300e6ccd-ecf4-425e-8574-3debe305aafb"
      },
      "df2dd6ff-570b-4b75-9cb7-1ff1dbdd4f55": {
       "attrs": {
        "height": 0.6666666666666666,
        "pad": 0.01,
        "treemap:weight": 1,
        "width": 0.5,
        "x": 0.5,
        "y": 0
       },
       "id": "df2dd6ff-570b-4b75-9cb7-1ff1dbdd4f55"
      }
     }
    },
    "2586ca7d-5091-40ea-b566-ccc5fbf833c6": {
     "id": "2586ca7d-5091-40ea-b566-ccc5fbf833c6",
     "prev": "f001d476-5814-4664-a722-f04f5d23cd52",
     "regions": {
      "d6011048-43db-4990-a82e-768683aa4fe5": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "ceb5f5a0-a5e8-435e-ae16-23c2ba8c6ab2",
        "part": "whole"
       },
       "id": "d6011048-43db-4990-a82e-768683aa4fe5"
      }
     }
    },
    "27ee4130-d0bb-4287-b8fe-75a7b0ecf178": {
     "id": "27ee4130-d0bb-4287-b8fe-75a7b0ecf178",
     "prev": "2586ca7d-5091-40ea-b566-ccc5fbf833c6",
     "regions": {
      "7a689d66-0c9d-4492-928b-f35bfd2ffc4c": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "e6c2e441-eb7b-4a4c-9c9c-b88cc9a2527f",
        "part": "whole"
       },
       "id": "7a689d66-0c9d-4492-928b-f35bfd2ffc4c"
      }
     }
    },
    "2de0c027-7a07-4f7e-8594-a98d36125372": {
     "id": "2de0c027-7a07-4f7e-8594-a98d36125372",
     "prev": "75e76bd9-24ae-4c42-b6bc-5f58a0550ba8",
     "regions": {
      "868fd842-e6fb-48b2-9ac5-95e8fe20927e": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "0e25dad3-add0-466e-8f71-e771d6ec4500",
        "part": "whole"
       },
       "id": "868fd842-e6fb-48b2-9ac5-95e8fe20927e"
      }
     }
    },
    "5613e857-5b4e-42e4-9feb-df0440592ca2": {
     "id": "5613e857-5b4e-42e4-9feb-df0440592ca2",
     "prev": "564dae42-4185-46c1-b156-e503f475e25c",
     "regions": {
      "17e888b0-050b-406a-a5a3-0d5c1605b8df": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "f5bcbcb5-4352-4674-a7b6-c8e576220422",
        "part": "whole"
       },
       "id": "17e888b0-050b-406a-a5a3-0d5c1605b8df"
      }
     }
    },
    "564dae42-4185-46c1-b156-e503f475e25c": {
     "id": "564dae42-4185-46c1-b156-e503f475e25c",
     "prev": "ba285213-f645-4314-afd5-0a656fa35631",
     "regions": {
      "328d4d72-cd9e-4e5b-aaa8-175833f5bfdb": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "8a4ac456-6c4b-4249-8662-b1cabfd7cee4",
        "part": "whole"
       },
       "id": "328d4d72-cd9e-4e5b-aaa8-175833f5bfdb"
      }
     }
    },
    "6ff94ac3-8ded-442e-ae43-aa0a5c14d468": {
     "id": "6ff94ac3-8ded-442e-ae43-aa0a5c14d468",
     "prev": "27ee4130-d0bb-4287-b8fe-75a7b0ecf178",
     "regions": {
      "ad759b3a-6080-4356-a9fd-87f2b1b90bc2": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "8458de53-35b5-405e-a372-5db5d2e2c2c5",
        "part": "whole"
       },
       "id": "ad759b3a-6080-4356-a9fd-87f2b1b90bc2"
      }
     }
    },
    "75e76bd9-24ae-4c42-b6bc-5f58a0550ba8": {
     "id": "75e76bd9-24ae-4c42-b6bc-5f58a0550ba8",
     "prev": "152c5a3b-78f9-4183-bce2-379a4012baf6",
     "regions": {
      "4afd3b41-071f-44eb-a8f6-9a7f780041c2": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "62fdd00c-a006-4f11-b9dc-e2ca072225d7",
        "part": "whole"
       },
       "id": "4afd3b41-071f-44eb-a8f6-9a7f780041c2"
      }
     }
    },
    "8c46fa2c-d5dc-4ef7-8d99-f504e2c3a4a1": {
     "id": "8c46fa2c-d5dc-4ef7-8d99-f504e2c3a4a1",
     "prev": "e2f5626f-0d60-47cb-967f-0edababb0329",
     "regions": {
      "af33776f-ec36-45be-a627-39573a78b1d6": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "0d61b4b4-163f-47fe-80f1-092287218273",
        "part": "whole"
       },
       "id": "af33776f-ec36-45be-a627-39573a78b1d6"
      }
     }
    },
    "ae3f4c01-80dc-4add-889a-05c74f7155a5": {
     "id": "ae3f4c01-80dc-4add-889a-05c74f7155a5",
     "prev": "6ff94ac3-8ded-442e-ae43-aa0a5c14d468",
     "regions": {
      "15f00a98-7b04-439d-996d-851b773b060a": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "96ca5c44-2cfc-471c-8da7-39870c822e20",
        "part": "whole"
       },
       "id": "15f00a98-7b04-439d-996d-851b773b060a"
      }
     }
    },
    "ba285213-f645-4314-afd5-0a656fa35631": {
     "id": "ba285213-f645-4314-afd5-0a656fa35631",
     "prev": "8c46fa2c-d5dc-4ef7-8d99-f504e2c3a4a1",
     "regions": {
      "6cddb9f2-8e39-4010-8fab-3e70b3a8993f": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "b878a4f9-4345-4abb-81f4-5a731c639ab8",
        "part": "whole"
       },
       "id": "6cddb9f2-8e39-4010-8fab-3e70b3a8993f"
      }
     }
    },
    "cd587236-8a19-444d-8b18-69d782dbf725": {
     "id": "cd587236-8a19-444d-8b18-69d782dbf725",
     "prev": null,
     "regions": {
      "ef377bfe-ff45-49db-b471-f79ecb10b580": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "dc7a1635-0bbd-4bf7-a07e-7a36f58e258b",
        "part": "whole"
       },
       "id": "ef377bfe-ff45-49db-b471-f79ecb10b580"
      }
     }
    },
    "e2f5626f-0d60-47cb-967f-0edababb0329": {
     "id": "e2f5626f-0d60-47cb-967f-0edababb0329",
     "prev": "ae3f4c01-80dc-4add-889a-05c74f7155a5",
     "regions": {
      "eef49fa0-0f9b-4228-8fb8-79e079bf7682": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "9110098b-9675-4d64-adf3-c947073d4c4d",
        "part": "whole"
       },
       "id": "eef49fa0-0f9b-4228-8fb8-79e079bf7682"
      }
     }
    },
    "f001d476-5814-4664-a722-f04f5d23cd52": {
     "id": "f001d476-5814-4664-a722-f04f5d23cd52",
     "prev": "cd587236-8a19-444d-8b18-69d782dbf725",
     "regions": {
      "5a176076-c5a5-4b50-ab2c-9cd0baedad45": {
       "attrs": {
        "height": 0.8,
        "width": 0.8,
        "x": 0.1,
        "y": 0.1
       },
       "content": {
        "cell": "53eee250-b3d0-4262-ad09-e87fb2acf82e",
        "part": "whole"
       },
       "id": "5a176076-c5a5-4b50-ab2c-9cd0baedad45"
      }
     }
    }
   },
   "themes": {
    "default": "c6b5d1ad-d691-4000-9f62-de7fc0e83644",
    "theme": {
     "586a6e7a-f661-4d6c-90d0-1392715bea27": {
      "id": "586a6e7a-f661-4d6c-90d0-1392715bea27",
      "palette": {
       "19cc588f-0593-49c9-9f4b-e4d7cc113b1c": {
        "id": "19cc588f-0593-49c9-9f4b-e4d7cc113b1c",
        "rgb": [
         252,
         252,
         252
        ]
       },
       "31af15d2-7e15-44c5-ab5e-e04b16a89eff": {
        "id": "31af15d2-7e15-44c5-ab5e-e04b16a89eff",
        "rgb": [
         68,
         68,
         68
        ]
       },
       "50f92c45-a630-455b-aec3-788680ec7410": {
        "id": "50f92c45-a630-455b-aec3-788680ec7410",
        "rgb": [
         155,
         177,
         192
        ]
       },
       "c5cc3653-2ee1-402a-aba2-7caae1da4f6c": {
        "id": "c5cc3653-2ee1-402a-aba2-7caae1da4f6c",
        "rgb": [
         43,
         126,
         184
        ]
       },
       "efa7f048-9acb-414c-8b04-a26811511a21": {
        "id": "efa7f048-9acb-414c-8b04-a26811511a21",
        "rgb": [
         25.118061674008803,
         73.60176211453744,
         107.4819383259912
        ]
       }
      },
      "rules": {
       "blockquote": {
        "color": "50f92c45-a630-455b-aec3-788680ec7410"
       },
       "code": {
        "font-family": "Anonymous Pro"
       },
       "h1": {
        "color": "c5cc3653-2ee1-402a-aba2-7caae1da4f6c",
        "font-family": "Lato",
        "font-size": 8
       },
       "h2": {
        "color": "c5cc3653-2ee1-402a-aba2-7caae1da4f6c",
        "font-family": "Lato",
        "font-size": 6
       },
       "h3": {
        "color": "50f92c45-a630-455b-aec3-788680ec7410",
        "font-family": "Lato",
        "font-size": 5.5
       },
       "h4": {
        "color": "c5cc3653-2ee1-402a-aba2-7caae1da4f6c",
        "font-family": "Lato",
        "font-size": 5
       },
       "h5": {
        "font-family": "Lato"
       },
       "h6": {
        "font-family": "Lato"
       },
       "h7": {
        "font-family": "Lato"
       },
       "pre": {
        "font-family": "Anonymous Pro",
        "font-size": 4
       }
      },
      "text-base": {
       "font-family": "Merriweather",
       "font-size": 4
      }
     },
     "c6b5d1ad-d691-4000-9f62-de7fc0e83644": {
      "backgrounds": {
       "dc7afa04-bf90-40b1-82a5-726e3cff5267": {
        "background-color": "31af15d2-7e15-44c5-ab5e-e04b16a89eff",
        "id": "dc7afa04-bf90-40b1-82a5-726e3cff5267"
       }
      },
      "id": "c6b5d1ad-d691-4000-9f62-de7fc0e83644",
      "palette": {
       "19cc588f-0593-49c9-9f4b-e4d7cc113b1c": {
        "id": "19cc588f-0593-49c9-9f4b-e4d7cc113b1c",
        "rgb": [
         252,
         252,
         252
        ]
       },
       "31af15d2-7e15-44c5-ab5e-e04b16a89eff": {
        "id": "31af15d2-7e15-44c5-ab5e-e04b16a89eff",
        "rgb": [
         68,
         68,
         68
        ]
       },
       "50f92c45-a630-455b-aec3-788680ec7410": {
        "id": "50f92c45-a630-455b-aec3-788680ec7410",
        "rgb": [
         197,
         226,
         245
        ]
       },
       "c5cc3653-2ee1-402a-aba2-7caae1da4f6c": {
        "id": "c5cc3653-2ee1-402a-aba2-7caae1da4f6c",
        "rgb": [
         43,
         126,
         184
        ]
       },
       "efa7f048-9acb-414c-8b04-a26811511a21": {
        "id": "efa7f048-9acb-414c-8b04-a26811511a21",
        "rgb": [
         25.118061674008803,
         73.60176211453744,
         107.4819383259912
        ]
       }
      },
      "rules": {
       "a": {
        "color": "19cc588f-0593-49c9-9f4b-e4d7cc113b1c"
       },
       "blockquote": {
        "color": "50f92c45-a630-455b-aec3-788680ec7410",
        "font-size": 3
       },
       "code": {
        "font-family": "Anonymous Pro"
       },
       "h1": {
        "color": "19cc588f-0593-49c9-9f4b-e4d7cc113b1c",
        "font-family": "Merriweather",
        "font-size": 8
       },
       "h2": {
        "color": "19cc588f-0593-49c9-9f4b-e4d7cc113b1c",
        "font-family": "Merriweather",
        "font-size": 6
       },
       "h3": {
        "color": "50f92c45-a630-455b-aec3-788680ec7410",
        "font-family": "Lato",
        "font-size": 5.5
       },
       "h4": {
        "color": "c5cc3653-2ee1-402a-aba2-7caae1da4f6c",
        "font-family": "Lato",
        "font-size": 5
       },
       "h5": {
        "font-family": "Lato"
       },
       "h6": {
        "font-family": "Lato"
       },
       "h7": {
        "font-family": "Lato"
       },
       "li": {
        "color": "50f92c45-a630-455b-aec3-788680ec7410",
        "font-size": 3.25
       },
       "pre": {
        "font-family": "Anonymous Pro",
        "font-size": 4
       }
      },
      "text-base": {
       "color": "19cc588f-0593-49c9-9f4b-e4d7cc113b1c",
       "font-family": "Lato",
       "font-size": 4
      }
     }
    }
   }
  }
 },
 "nbformat": 4,
 "nbformat_minor": 1
}